Lagopus muta (rock ptarmigan): 125701363
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Entry
125701363 CDS
T09141
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125701363 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125701363 (PRPF6)
Spliceosome [BR:
lmut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125701363 (PRPF6)
Complex C
U5 SnRNP specific factors
125701363 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
TPR_1
TPR_CcmH_CycH
T7SS_EccA1_N
ARM_TT21_C
TPR_21
ARM_TT21_5th
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
125701363
NCBI-ProteinID:
XP_048819313
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All DBs
Position
16:4512040..4534890
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNADLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIVNWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ttgggccgcggagccacaggtttcaccacccgctctgatatcggccccgcacgtgatgcc
aacgacccggtggatgaccgccatgccccgccagggaaaaggacggtgggggatcagatg
aagaagaatcagacggctgatgatgatgatgaagatttgaatgacaccaattacgatgag
ttcaatggatatgctggcagcctgttctcaagtggtccctacgaaaaggacgatgaggaa
gcagatgctatttatgctgctctggataaaaggatggatgaacgaaggaaagaaagaagg
gaacaacgagaaaaagaggaaatagaaaaataccgaatggaacgacccaaaattcagcag
cagttctcagacttgaaacggaagctggcagaggtcacagaagaggaatggctgagtatt
ccagaggttggtgatgccaggaacaaacgccagaggaatcctcgctatgagaagctgact
cctgtccctgacagcttctttgcaaagcatttgcagtccggggagaatcacacatctgtg
gacccgcggcagacgcaatttggtggattgaataccccatatccagggggcttgaatact
ccatacccaggaggaatgactccaggcttaatgacacctgggacaggtgaattggatatg
aggaagattggccaagccaggaacaccttgatggatatgaggctaagccaggtgtctgat
tctgtgagtgggcagactgtggtggacccgaaaggatatctgacagatttgaattccatg
attcccacacatggaggagatatcaatgacatcaaaaaagctcgtttgctcctgaaatct
gtacgagaaaccaatcctcatcatccaccagcctggatagcatcagcccgactggaagaa
gtcactggcaaactgcaggtggctcggaatctcatcatgaaaggaactgagatgtgcccc
aagagtgaagatgtttggttagaagctgctcggcttcagcctggagatacagccaaggct
gttgtggcccaagctgtccgtcacctccctcagtctgtccgaatctacataagagcagca
gagctggagacagatatccgtgcaaagaagcgtgtcctgaggaaagcccttgagcatgtt
ccaaattcggtgcgtttgtggaaggcagctgtggagctggaagaacctgaggatgccaga
atcatgctgagccgtgctgtggagtgctgccctactagtgtggaactgtggcttgctctg
gcaagactggagacatatgagaacgctcgtaaagtccttaacaaagcccgtgagaatatt
ccaacagatcgtcacatctggattactgctgccaagctggaggaagccaatggaaacacc
cagatggtggagaaaatcatcgacagagccatcacttctctgagggccaacggtgtggaa
atcaacagagagcaatggatacaggatgctgaggaatgtgataaagctggaagtgtggcc
acgtgccaggcgatcatgcgagctgtgattgggattgggattgaggaagaagacaggaag
cacacctggatggaagatgcagacagttgtgttgctcataatgctctggaatgtgcccga
gccatttatgcttacgccttgcaagttttcccaagcaagaagagcgtgtggttgagagca
gcatactttgaaaagaaccatggaacaagagaatccttggaggctcttttgcagagagct
gttgctcactgtcccaaagcagaggtgctgtggctcatgggagccaagtcgaagtggctg
gcaggagatgtgccagcagccagaagcatcttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtcaagctggagtcggaaaacaatgaatatgaaaga
gcaaggaggctgctggcaaaagctcgcagcagtgcccccactgcaagggtcttcatgaag
tctgtgaagttggaatgggtgcttggaaacattgctgcagcacaggagctttgtgaggaa
gccctaaagcactacgaagacttccccaaactgtggatgatgaagggacaaatcgaggag
caaaaagagctggtagagaaagcaagggaggcttacaatcaagggctgaagaagtgtccc
cattccatacctttgtggcttttgctgtccagactggaagagaaggtggggcagttgacc
agagcaagggccatcttggaaaagtctcgtctgaagaacccaaagaatgcagatctctgg
ttggagtctgtgagactggagtacagagctgggctgaagaacattgcaaatactctgatg
gccaaggccttgcaggaatgcccaaattcaggaatcctgtggtcagaggcaattttcctt
gaagcgcgaccacaacggaagaccaagagtgtggatgccctgaagaagtgtgagcatgac
ccacatgttctgctggctgtggccaaattattctggagtgagcgtaaaataacgaaggcc
cgtgaatggttccaccgaacggtgaagattgattctgacctgggagatgcctgggctttc
ttctacaagtttgagctccagcatggcacagaggagcaacaggaagaggtgaggaagcgc
tgtgagaacgctgagccccgccacggagagctttggtgtgatgtctccaaagacatagtg
aactggcagaagaagattggggagattcttgtgcttgtggcagccaagctgaaaaatacc
ttctag
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