Lagopus muta (rock ptarmigan): 125701421
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Entry
125701421 CDS
T09141
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125701421
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125701421
Spliceosome [BR:
lmut03041
]
Complex C
Other components
Complex C specific factors
125701421
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SSDB
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
ABC_tran
DEAD
Cas3-like_C_2
AAA_19
UPF0203
Motif
Other DBs
NCBI-GeneID:
125701421
NCBI-ProteinID:
XP_048819423
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All DBs
Position
16:11918240..11945786
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AA seq
715 aa
AA seq
DB search
MAAPVGPVKFWKPGTEGPGVSVSEERQSPAESSGVTVIYNPYASLSIEQQRQKLPVFKLR
NHILYLVESYQTLVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVSVAGRV
ADERGAVLGHEVGYCIRFDDCTDPQATRIKFLTDGMLVREMMADPLLTRYSVLMLDEAHE
RTLYTDIAIGLLKKIQKKRGDLRLIVASATLDAEKFKDFFNQNDTSDPSKDTSVILTVEG
RTFPVDIFYIQSPVPDYIKSTVETAMKIHQMENDGDILAFLTGQEEVETVVSMLIEQARA
LSRTGMKKHLRVLPMYAGLPSPDQMKVFERVSRSVRKVIVATNVAETSITIHGIAYVIDC
GFVKLRAYNPKTAIECLVVVPVSKASANQRAGRAGRNRSGKCYRLYTEEDFEKLPKSTVP
EMQRSNLAPVILQLKALGIDNVLRFPFLSPPPAQSMVQALELLYALGGLDMHCRLTEPLG
MRIAEFPLNPMFAKMLLESGNFGCSQEILTIAAMMQIQNIFLIPPNQKSQAARQHRKFAV
EEGDHLTMLNVYEAFVKHSKSSQWCQEHFLNYKGLVRASVVREQLKKLLVRFKVPKKSSE
GDPDPVLRCIVSGFFANAAKFHSTGAYRTIRDDHELHIHPTSVLYAEKPPRWVVYNEVIQ
TAKYYMRDVTAIESAWLVELAPHFYQQGTVRNRHKAQTEEERKVYKNLKGGQKED
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccgtgggaccggtgaagttttggaagccgggcacagaaggtcctggcgtc
agcgtctcggaggagaggcagagccctgcagagagcagtggtgtaacagtcatctataat
ccttatgcttctctgtctattgaacaacaaagacaaaagctgcccgtttttaagctaaga
aatcacatactttatctagtggagagctatcagactctggtgattgttggagaaacagga
tgtgggaagtcaacgcaaattccacagtacctagcagaagctggctggacagctgaagga
agagtggttggggtgacacagcctcgtcgagttgctgctgtttcagttgcaggccgagtt
gctgatgaaaggggtgcagtgttgggtcatgaagttggatattgcattcgttttgatgac
tgcacggatccacaggctacaagaattaagttcctaaccgatggtatgctggtaagggag
atgatggctgatcctctgttaacaagatacagtgttctcatgctggatgaagcccatgaa
aggactctttatacagatattgccattggattactaaaaaagattcaaaagaagcgtgga
gatcttcgactgattgtggcttcagccaccttggatgcagagaaattcaaggatttcttc
aaccaaaacgataccagtgaccccagcaaagataccagtgtgatccttactgtggagggg
aggacgtttccagttgacatcttttacatacagagtcctgttcctgattatataaaatca
actgtggaaactgcaatgaaaattcaccagatggagaatgatggtgatatactggcattt
ttgactggccaggaggaagtggagactgtagtttctatgcttatagaacaggctcgggcc
ctttctcgcactggaatgaaaaagcacctccgtgttctccccatgtatgctgggctgcct
tctcctgatcagatgaaagtatttgagagagtttctcgcagtgtcaggaaggtgatagta
gccaccaatgttgctgagacttctatcaccatccatggcattgcgtatgtaatcgattgt
ggttttgtgaagcttcgagcctataatcccaaaacagccattgaatgccttgtggtggta
ccagtgtccaaggcttcagctaaccagagagcaggacgtgcaggccggaaccgctctggg
aagtgttacaggctctatacagaggaagactttgagaagttgcccaagtccactgttcct
gagatgcagcgcagcaaccttgcacctgtcatcttgcagctgaaggctctgggaattgac
aacgtgctcaggttccccttcctttcgccacctcctgcacagtctatggtacaagcttta
gaattactgtatgctttaggaggtttggatatgcactgccgtttaactgagcccctggga
atgagaatagcagagtttcctctgaatccgatgtttgcaaagatgcttctggaatcagga
aattttggctgctcccaggagattttaacaattgctgcaatgatgcagattcagaacatc
tttttgatcccgccgaatcaaaaatctcaagctgccaggcaacacagaaagtttgctgtg
gaggaaggagatcatctcactatgcttaatgtttatgaagcctttgtcaaacacagcaaa
agctctcagtggtgtcaggaacactttctgaactacaaaggacttgttagagcttctgtt
gtaagggagcagctcaaaaagcttcttgtacgctttaaagtgccaaagaagtccagtgaa
ggtgatccagatcctgttctaagatgcatagtttctggattctttgctaacgcagctaaa
ttccactctactggagcttacaggactatccgtgatgaccatgaacttcatatccaccct
acttcagtactgtatgcagagaaacctccacgctgggtagtgtacaacgaagtcatacag
accgccaagtactacatgagagatgtgactgccattgaatctgcatggctcgtggagctg
gcacctcatttttaccagcaaggaacggtacggaatcggcataaagcccaaacggaagaa
gaaagaaaagtgtacaaaaacctgaagggaggacagaaagaggactga
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