Lagopus muta (rock ptarmigan): 125701572
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Entry
125701572 CDS
T09141
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125701572 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125701572 (THOC5)
03041 Spliceosome [BR:
lmut03041
]
125701572 (THOC5)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125701572 (THOC5)
Spliceosome [BR:
lmut03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125701572 (THOC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
125701572
NCBI-ProteinID:
XP_048819741
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Position
17:complement(1572099..1583540)
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AA seq
683 aa
AA seq
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MSSDSSKKRKPKVIRTDGGPQEGKRGKADGEQDARYYSEECEVDLRDPIKDYELYKETCQ
ELQRLMAEIQELKSRGVKDNASEIDERRVQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSLEEFYSEAPTEISRPDITL
TEPHQQTLARLDWELEQRKRLAERYKECQTIKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYGQACDKKLVVAIEGSVEEAKAL
YKPPEDSQDDESDSDMEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVTIDLKCKDENVL
HLTFYYLMNLNIMTVKTKVTTAAELATAISAGDLLSPDSLLSCLYPGDHGKKTPNPANQF
QFDKVGILTLSDYVTELGHPYVWVQKLGGLHFPKDQPQHTVTADNSLSASHMEMTMKLLR
TRLQSRLALHKQFASLEHGVVPVSSECQHLFPTKIVSRLVRWAAIPFEDYAELPYTKDVV
EAGLAEDTHLYYMALIERGTAKLQVAVVLNPGYSALPPIFSLCLNWKGERTGSNDDNIRA
MESEVNVCYKELWGPKPGYQLLTNQLQRLCMVLDVYLETEPHDTTVEGPKEFPQEKMCLR
LVRGPMRLKPFKFNYPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggactccagcaagaagaggaagcccaaagtgatccgaacggatgggggcccg
caggagggcaagcggggcaaagccgatggcgagcaggatgctcggtactacagtgaggag
tgtgaggttgatctccgggaccccatcaaggactatgaactctacaaagagacgtgccag
gagcttcagaggctcatggcagaaatccaggagctgaagagcagaggcgtcaaggacaat
gcctctgagatagacgagcgacgcgttcagagctgcgtgcacttcatgaccctgaagaag
ctcaatcggctggctcacattcggctgaagaagggccgagatcagacccatgaggcgaag
cagaaggttgatgcctatcacctgcagctccagaatttgctttatgaggtgatgcacctg
cagaaagagatcaccaaatgcctggagttcaaatcgaagcatgaggagatcgaactggtg
agcctggaggagttttacagcgaggctcccactgaaatcagccgacctgacatcaccctg
actgagccccaccagcagacccttgcccgcctggactgggaactggagcagcgtaagaga
ctggcagagaggtacaaggaatgccagaccatcaaggagaagatcctgaaggagattgaa
gtgaaaaaggagtatctgagcagcctccagcctcgcctcaacagcattatgcaggcctcc
ctgcctgtccaggagtacctcttcatgcctttcgaccaggcacacaagcagtacgagaca
gcccggcacctgccgccgcccctctacgttctttttgttcaagccagtgcctatggtcag
gcctgtgacaagaagcttgtggtggccattgaaggcagtgtagaggaagccaaagccttg
tacaagccacctgaggactcgcaggatgatgagagcgattctgacatggaggaggagcag
accacgaagcggcgcaggcccaccctgggtgtgcagctggatgacaaacgcaaggagatg
ctgaagcggcacccgctgtctgtcaccatcgacctgaagtgcaaagatgagaacgtgctt
cacctgaccttctactacttgatgaacctcaacatcatgactgtgaagaccaaggtgacc
actgctgctgagctggcgactgccatcagtgctggcgacttgctctccccagactccctc
ctgagctgcctgtacccaggagaccatgggaagaaaacccccaatccagccaaccagttc
cagtttgacaaagtgggcatcctgaccttgagtgactacgtgacagagctggggcatccc
tatgtgtgggtgcagaagctgggcggcctgcatttccctaaggatcagcctcagcacact
gtcactgcagacaactcgctgagcgcgagccacatggagatgaccatgaagctgctgagg
acgaggctgcaatcccgcctggctctccacaagcagtttgcttctcttgagcatggcgtg
gtgccggtgtccagcgagtgccagcatctcttccctaccaagatcgtgtcccgcctggtg
aggtgggctgccatccccttcgaggattatgcggagctgccctacactaaagacgtggtg
gaggctgggctggctgaagacacccatctctattacatggccctgatagagaggggaaca
gccaagctccaggtcgctgtggtcctgaatcccggttactccgcgctgccacccatcttc
agcctctgcctgaactggaaaggagagcgaaccggcagcaacgatgacaacattcgggct
atggagagcgaagtcaacgtgtgctacaaggagctgtgggggcccaaaccgggctaccag
ctcctcaccaaccagctgcagcgcctctgcatggtgctggacgtctacctggagacggag
ccccacgacaccactgtggaggggcccaaggagttcccccaggagaagatgtgcctgcgc
ctggtcaggggccccatgcgcttgaagccgttcaagttcaactaccctcagggattcttc
agccaccgctga
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