KEGG   Lagopus muta (rock ptarmigan): 125701777
Entry
125701777         CDS       T09141                                 
Symbol
SF3A1
Name
(RefSeq) splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
lmut  Lagopus muta (rock ptarmigan)
Pathway
lmut03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lmut00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125701777 (SF3A1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lmut03041]
    125701777 (SF3A1)
Spliceosome [BR:lmut03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    125701777 (SF3A1)
 Complex B
    125701777 (SF3A1)
 Complex C
   U2 SnRNP specific factors
    125701777 (SF3A1)
SSDB
Motif
Pfam: Surp PRP21_like_P ubiquitin Ubiquitin_2 Rad60-SLD Presenilin
Other DBs
NCBI-GeneID: 125701777
NCBI-ProteinID: XP_048820216
LinkDB
Position
17:complement(1848415..1861721)
AA seq 790 aa
MPAGPVQAGPPAQPAPPAESKPPEEEPKEEAAPAKPVVGIIYPPPEVRNIVDKTASFVAR
NGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQT
AQQQLPQKVQAQVIQETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLT
QLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKKEAENPKEVLDQV
YYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEE
LGARILIQERYEKFGESEEVEMEVESDEEDEKQEKTDEPSTQLDQDTQVQDMDEGSDDED
ESQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPAS
KMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETA
IGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDSKE
KIGPSKPNEMPQPPPPSSASNPPPSAQPITSVPRPPTMPPPVRAAVVSAVPVMPRPPMTS
VVRLPPGSVIATPMPPIIHTPRINVVPMPPSAPPIMSPRPPPMIVPTAFVPAPPVAPVPS
PAPMPPVHPPPPMEDEPVSKKLKSEDSLIPEEEFLRRNKGPVTVKVQVPNMQDKTEWKLN
GQVLVFTLPLSDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMTSGSLIHL
ALKERGGRKK
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgccggccggtcccgtgcaggccgggcctccggcgcagccagcgcctcccgcggagagc
aaaccgccagaagaggagccaaaagaggaagcagcaccagccaagcctgtggtgggaatt
atttatcctcctcctgaggtcaggaatattgttgacaagactgccagcttcgtagccaga
aatggtccagaatttgaagctcgaattcgtcagaatgaaataaataaccctaagttcaat
ttcttgaatcccaacgatccttaccatgcgtactaccggcacaaagtcagcgagttcaag
gagggcaaagcacaggagccctcagctgccattcccaaggtcatgcaacagcagcaaact
gctcagcagcagcttccacagaaggtgcaggcccaggtgatccaggagacggttgttcca
aaagagccacctccagagtttgagttcatcgcagatccaccctcgatttctgcctttgat
ttggatgtggtgaagctgacagcgcagtttgtggctcggaacgggaggcagttcctgact
cagctgatgcagaaggaacagaggaactaccagtttgacttccttcgcccgcagcacagc
ctcttcaactacttcacaaagctggttgagcagtacacaaagatcttgatcccaccaaaa
ggcttactcatcaagctcaagaaggaggctgaaaaccccaaagaagtcctggatcaggtg
tattacagagtggagtgggcaaagttccaggagcgagagagaaagaaggaagaggaagag
aaggagaaggaacgtgttgcttatgctcagattgattggcatgactttgtggttgtggaa
acggtggactttcagcccaacgagcaagggaatttcccacctcccaccactccagaagag
ctgggagctcgaatcctcatccaggagcgctatgagaagtttggggaaagtgaggaggta
gagatggaggtggagtcagatgaagaagatgaaaaacaagagaaaacagatgagccttcg
actcagctggatcaagacacgcaggtgcaggatatggatgagggctcagatgacgaagat
gaaagtcagaaagttcctcctcctccagaaactccgatgccgccacctcttcctcccaca
ccagatcaggtcatcgtgaggaaagactacgatcccaaagcttcaaaaccgttaccgcct
gccccagctccagacgagtatcttgtttcccccatcactggggagaagattcctgccagt
aaaatgcaagagcacatgaggattggtctgctggatcctcgatggctggagcagcgcgat
cgctccatccgtgaaaagcagagcgatgatgaggtctatgccccaggtttggatatcgaa
agcagcttgaagcagctggcggagcgccgtaccgatatctttggtgtggaagaaactgcc
attggtaagaagattggtgaagaggaaattcagaaaccagaggaaaaggtgacctgggat
ggccactcaggcagcatggcccgcacacaacaggctgctcaggccaatattactcttcaa
gagcaaattgaagctatccataaggccaagggactggtgccagaagatgacagcaaggag
aagattggtcctagcaaacccaatgaaatgccccagccaccccctccttcatcagcatca
aatccccctccgagtgctcagcctatcacttctgtgcctcgtccacccacaatgcctcct
cctgtccgtgctgctgttgtttctgcagttcctgtcatgcctcgtcccccgatgacctcc
gtggtccgtttacctccaggctctgtcatagccacccccatgccaccaataatccacacc
ccacggatcaacgttgtccccatgcctccatctgctcctcccatcatgagccctcgccca
cctcccatgatagtaccaacagcatttgttccagcacctcccgtggctccagttccttcc
ccagcaccaatgcctcccgttcacccaccaccacctatggaggatgagccagtttcaaag
aaactgaagagtgaggacagcttgattccagaggaggagtttctgcgcaggaacaagggc
ccagtcacagtcaaagtccaggtccccaacatgcaggacaagactgaatggaagctgaat
ggccaagtgctggtgttcactctgccactctcagaccaggtgtctgttataaaggttaag
atccatgaggccacagggatgccagctgggaaacagaagctgcagtatgagggcatcttc
atcaaggattcaaattccctggcttattacaacatgacaagtggctctctgattcacctg
gcactcaaagaaagaggaggcagaaagaaatag

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