Lagopus muta (rock ptarmigan): 125702080
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Entry
125702080 CDS
T09141
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125702080 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125702080 (DDX5)
03009 Ribosome biogenesis [BR:
lmut03009
]
125702080 (DDX5)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125702080 (DDX5)
Spliceosome [BR:
lmut03041
]
Complex A
U1 snRNP components
U1 related factors
125702080 (DDX5)
Complex B
125702080 (DDX5)
Ribosome biogenesis [BR:
lmut03009
]
Eukaryotic type
Pre-60S particles
Helicases
125702080 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
P68HR
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
125702080
NCBI-ProteinID:
XP_048820895
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All DBs
Position
18:8136654..8144161
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AA seq
603 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKAQNGAYSTQSFSNGTPFGNGF
AAAGMQAGFRAGNPAGAYQNGYDQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPAS
YSQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtttggagcccctcgttttggaggaagt
agagccggtccactttctgggaaaaaatttggaaaccctggggaaaagcttaccaaaaag
aaatggaatttggatgaactgcccaaatttgaaaagaacttctatcaagaacatcctgat
gtagttagacgtactgcgcaagaggttgagcagtacaggtcaagcaaagaagtcacagtt
aggggccataactgtccaaaaccaataataaacttctatgaagctaactttcctgcaaat
gttatggaagtgattcagaggcagaacttcaccgagcctactgcaattcaagcacaagga
tggccagttgccttgagtggattggatatggttggagttgcacagactggatcagggaaa
acactgtcttacttgttgcctgccattgtgcatataaatcatcagccattcctggagaga
ggagatggacctatttgtcttgtgctggcaccaactcgtgaactggctcagcaagtgcag
caggtagctgctgaatatagcagagcgtgtcgcttgaagtctacatgtatttatggaggt
gctccaaagggaccacaaatccgtgatttagaaagaggtgtggaaatttgcattgcaaca
cctggaagacttatagacttcttagaagctggaaagaccaatctcaggaggtgcacttac
cttgtccttgatgaagctgacaggatgcttgacatgggatttgaacctcaaatcagaaag
attgtggatcagataagacctgacaggcaaactctgatgtggagtgccacgtggccaaag
gaagttaggcagctggctgaagacttcttaaaagaatatgtacacatcaacattggtgca
ttagaactgagtgcaaatcacaacatccttcagattgttgatgtgtgtcatgatgtagag
aaggatgacaagcttattcgtttgatggaagaaatcatgagtgagaaggaaaacaagaca
attgtttttgttgaaaccaaaagacggtgtgatgaccttaccaggaaaatgaggagagat
gggtggccagcaatgggtattcatggtgataaaagccagcaggagcgcgactgggttcta
aatgaattcaaacatggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatatacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaaccctaaattgcttcagttgattgaagacagaggttcaggtcgttcccga
ggtgaccgacgtgacagatactctgcgggcaaaaggggtggatttagtagctttagagag
agggagaactttgagagaacttatggtgcactagggaagagagactttggagccaaagct
caaaatggggcctacagtacccagagtttcagtaatggaactccttttggaaatggcttt
gcagctgcaggcatgcaagctggcttcagggctggtaaccctgcaggagcttaccagaat
ggctatgatcagcagtatggaagtaacattgcaaatatgcacaatggcatgaaccaacag
cagtatgcatatcctgccactggtgctgctcctatgataggttacccaatgccagcgagt
tattctcaataa
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