Lagopus muta (rock ptarmigan): 125702315
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Entry
125702315 CDS
T09141
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125702315 (HELZ)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
125702315 (HELZ)
3'-5' decay
Other 3'-5' decay factors
125702315 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_16
AAA_7
Bac_DnaA
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
125702315
NCBI-ProteinID:
XP_048821371
LinkDB
All DBs
Position
18:complement(7811818..7885792)
Genome browser
AA seq
1942 aa
AA seq
DB search
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSQYPPAHLPEACQAEIDRIKIETL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAADKVPSGYHVEDLEEGSRDGWQFRPPPRGVTSSEEY
TLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLIE
KWMNSLSPEKVLSESIEGVRVEHNPELSVTVTTKKSHQTWTFALTCKPARMLYRVALLYD
AHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMVQNGIDHYIYKVSIAFNTEIFGTF
RQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVEFEPNET
TELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNIK
VQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVTK
EKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPLC
EMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQL
PPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQ
LDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPL
TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV
FRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHGI
TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRHQHSANTTKQQQSPPKGKVHHHNQNDH
FPPDGIVQPNPSVLIGNPIRAFTPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNMVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHHSPV
SIGQQQQLQHPDKEQHEQSRNGKSEGTAGPEINKIRTPEKKPVESKQVDLDANSQTRSPE
SRSNVAYPNAKFHRKDNLNPRQLNLHLTPPHSQYAVPNRHFQHLSQIPRQPYPLQQQQNL
LSQQQNHLPEQQNQMPPQQSQVVQQHNHLNQQPPQPSQLSPAYQAGPSQSFFNNPIPHRP
HSPAVDAVISEQHPPPMLQEVSNPLRPIAQHNPVLPTHLNNFIEENPSGMPLGDTLDRMH
GNVALETIRQQQQARLQQWNEHNAYLSQGTIPYQHHHHPHLPHLPQQPIGLHQQQQVRAN
WKLASNTEDETEATYSRFQDLLRELSHRDQSESRDLAEMPPPQSRLLQYRQVQPRSPPAL
PSPSCNSNHSGHFPNFTENNRDIEIPSNPAFQQHLPQIYNPPFSMPSEHITPSPLKYLQP
DGSWTYANLQQNHLMGQGFHYGIPPLPHRSQQNPFIQIQNHQHAVGQEPFHPLTSRAVSA
SSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEELSTPQDSLGQCKELQDHSNQSSFNYS
SPELWVNSSSSAPYPNIPCNGANRAVPHRELLAPLKTVKPPEEHLKAENIQLSNSFNYNV
LQHLGQFPPLMPNKQIMESNSTSQQNAGGSKPVMSYASALRAPPKPKPPPEQTKKNSDPL
SLFQELSLGSSSGSNGFYSYFK
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatcccttaagcagcag
gattatgaagtggcagtgaagcattgcacagaggcactcctttccctcagccagtacccc
ccagctcacctcccggaggcatgccaggcagaaatcgaccgcatcaaaatcgagactctg
ctgtatagaattgcttcctttttacaacttaaaaagtatgggcaagcagatgaagactgt
aggcatgtgctgggagaggggctggccaagggagatggatctttccgtgcggtgctctgc
tgcatgcatcttaaagggaagctgcaaattgtgtctaatgttctttccaaatcactgatg
ggtgaatcactgaacgggatggtaactaaagatctgacacgactgaaaacacttcttgct
gaaacagaggcagctgataaagttccatcaggatatcatgtagaagatttagaagaaggg
tcccgggatggctggcagttccgccctccacccaggggagtcacaagcagtgaagaatat
acactatgtaaaagatttttagagcaagggatctgcaggtacggtgcacagtgtacttca
gcacattcccaggaagagctaacagaatggcaaaaacgatatgcttcccgcttgatcaga
ttaaaacagcagaaggaaaacaaacagtgttcgggcagttatatggaaaccttgattgag
aaatggatgaattcgttatctcctgagaaagtgcttagtgaaagtatagaaggagtgaga
gtagagcataatcctgagctatcagtaactgtcaccaccaaaaagtctcatcaaacttgg
acgtttgctctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttatgat
gcccatcgtccacatttcagtatcattgcaatatctgctggagacagcactacccaggta
tcacaagaagttccagaaaactgtcaggaatggataggaggaaagatggtccagaatgga
atagatcactatatatacaaagtcagtatagcctttaacacggaaatctttggaactttt
cgccaaactgttgtgtttgattttggattagaaccagtcctcatgcaacgagtaatgatt
gatgctgcttcaactgaagatcttgaatatctgatgcatgcacggcaacagctactaact
acagccaagcgttgggattctacttctaagactattgtagaatttgaacctaatgaaact
actgaattggagaagagccttcttaccagataccaaatccctctatctgctgaccagtta
tttacacaatctgtcctggacaaatcattgaccaagaccaactatcagtcacggttgcat
gacctcctttatattgaggaaatagcacagtataaggaagttagcaagttcaacataaaa
gtgcaattgcagattgtagcaagcttcatgctcactggggtttctggaggtgcgaagtat
gcccaaaatggacaactttttgggcgctttaagctcactgaaacgctttcagaagacact
ttggcgggacggctggtgatgaccaaagtcaacgctgtttatttattgcctgtcactaaa
gagaagtcagcacagacccaaggaaccaaagagaaggtttatgaagcagctattgaagag
aaaacaaaggattacatcttcttgagggtatccagggaatgttgtgaagagcttaatctt
cgggcagattgtgagatgcaggttgaactgcagtttcagttaaatcgcttacccctctgt
gaaatgcattatgccttggacaggattaaggacaacagtattttgtttccagatgtcagc
atgactcccaccataccctggagtcccaacagacaatgggatgagcagttggaccctcgg
ctaaatgctaagcagaaagaggctgttctggctatcactaccccactttcaatacaactg
cctcctgttcttatcatcggtccctatgggacaggaaaaacgttcacgctggctcaggca
gtcaagcacatactccaacaacaggatactagcaggattctcatttgcacccattctaat
agtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaatccc
caggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccacccagtt
gtgcatcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaagaa
gatattcttaagcaacgagtagtagttgttactttaaatacatcacagtatctgtgtcaa
ctggatcttgaaccaggtttttttacacacattctgttagatgaagctgcgcaggctatg
gagtgtgaaactattatgcctctagcattagctaataaaaacacaagaattgtcttggct
ggagaccacatgcagctcagtccttttgtctacagtgaatttgccagggaaagaaacctt
catgtttcactgcttgatcggctctatgagcactaccctgcagaatttccatgcaggatc
ttgctgtgtgagaactatcgctcccatgaagctatcatcaattacacatctgaacttttc
tacgaaggcaaattgatggcaagtggaaagcagccagcacacaaagatttctacccttta
actttcttcacagcacgtggagaagacgtgcaggaaaaaaatagtacagctttttacaat
aatgcagaggtgtttgaagtagtggagcgtgttgaggagttaagaagaaaatggcctgtt
gcctggggcaagttggatgatggcagtataggtgttgtgactccttatgctgatcaagtg
ttcagaattcgggctgaacttcggaaaaaaaggctgtctgatgtcagtgtagagagagtg
ctgaacgttcagggaaagcagttcagagtgttgtttctcagcacagtacgaacacggcat
acatgcaaacacaagcaaaccccaattaaacggaaagagcagctactggaggattcaaca
gaggacttggattatggttttctgtctaattacaaacttctcaatactgccattacaaga
gcacaatccttggtagctgtggtgggagatcccattgctttatgttccattggaagatgc
aggaaattttgggaaaggtttattgccctatgtcatgagaatgaaagtctccacggtatc
acatttgaacagatcaaagctcagctggaagctttggagttaaagaaaacttatgtgttg
aacccactggctcctgagtttattccccgagctcttcggcatcagcattcggcgaatacc
accaaacagcagcagtcacctccaaagggcaaggtccatcatcataaccagaatgaccat
ttcccacctgatggaattgttcagcccaatccttctgttctaataggaaatcctatccga
gcatttactcctccccctcctcctctgggacctcaccccaacctggggaaatctccaagt
cctgttcaaaggatagatccacacactgggacaagtattctatatgtacctgctgtctat
ggaggaaacatggtcatgtctgtgcctttgcctgtaccgtggacggggtatcagggtagg
tttgcagttgaccctcgaatcataactcatcaagcagctatggcatataatatgaacctg
ttacaggcacatgggcgtgggtctcctataccttatggcttgggacatcattcaccagtt
agtataggacagcagcaacaacttcagcatccagacaaggagcaacatgagcaaagtcga
aatggtaaaagcgaaggcactgctggacctgaaatcaataaaattcggacacctgagaag
aaacctgtagaatccaagcaggttgacttagacgcaaattctcagacgagaagcccggaa
tcacgttccaatgttgcttaccctaatgctaaatttcaccgtaaagataatcttaacccc
aggcagctgaatctgcatctcaccccaccccactcgcagtacgcagttcccaatcgccac
ttccagcacctgtcccagataccaaggcagccatatcctctgcaacagcagcaaaacctt
ttaagtcaacaacaaaatcatttgcctgaacaacaaaaccaaatgccaccacagcaaagc
caggtagttcagcagcataatcatttgaaccaacagcctccacaaccttcgcagctttcc
cctgcttaccaggcaggccctagccaatctttttttaataacccaattccccaccgacca
cattctcctgctgtagatgctgtgatttcagaacaacaccccccacctatgttacaagaa
gtcagtaatcctttgaggcctattgcacagcacaaccctgttctgccaacccacttgaac
aacttcattgaagagaatccatcaggaatgcccctaggggacactttagatcgtatgcat
ggaaatgtagctttggaaacaataaggcagcagcaacaagccaggttacagcaatggaat
gaacataatgcctatctcagtcaaggcacaattccatatcaacaccatcaccatcctcat
ctaccacatcttcctcagcaaccaattggattgcatcaacagcagcaagttagggcaaac
tggaaacttgccagtaatacagaagatgaaacagaggcaacatattcaagattccaggat
ttgctcagagaactgtcacaccgtgatcaaagtgaaagtcgggacttagctgaaatgcca
ccccctcagtcaagactgttgcaatatagacaagttcagcccagaagcccaccagcactc
ccttctccttcctgcaactctaatcacagtggtcactttcctaacttcactgaaaacaac
agagacattgaaatccccagtaacccagcatttcagcagcatttaccccaaatatacaat
ccccctttctcaatgccatctgaacacataaccccatctcccttgaaatacctgcaacct
gatggatcgtggacttatgctaacctacagcagaatcacctaatggggcagggctttcat
tatggtatacctccattgccccataggtcacaacaaaacccttttatacaaatacagaat
catcagcatgcagtcggtcaggagccatttcatccactcacatctcgagcagtatctgct
tcttcgctccacagcttagaagagtatgaaccaagaggaccaggcaggccgttgtaccaa
agaagaatttcctctagttcagtccaggcttgttctgaagaattaagcactcctcaagac
agtcttggtcagtgtaaagagcttcaggaccacagtaatcagtcatccttcaactattca
tcacctgagttgtgggtaaactcctcctcatctgccccatacccaaacattccatgcaat
ggagccaacagagcagttccacaccgggagttgttagctccgctgaaaacagtcaagccc
ccagaggagcacctgaaggctgaaaacatacagctctccaattccttcaactacaacgtg
ctgcagcatctcggccagttcccacctctcatgcccaacaagcagatcatggaatccaac
agcaccagccagcagaacgctggtgggagcaagcctgtcatgtcctacgcaagtgctctg
cgggctccgccgaagcccaaacctcctcctgagcagacaaaaaagaatagtgaccctttg
tctttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttactcctat
tttaaataa
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