Lagopus muta (rock ptarmigan): 125702416
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Entry
125702416 CDS
T09141
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125702416 (SETX)
Enzymes [BR:
lmut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125702416 (SETX)
5.6.2.5 RNA 5'-3' helicase
125702416 (SETX)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125702416 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
AAA_22
SLFN-g3_helicase
AAA_16
SAS4
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
125702416
NCBI-ProteinID:
XP_048821574
LinkDB
All DBs
Position
19:complement(6484797..6515671)
Genome browser
AA seq
2797 aa
AA seq
DB search
MNVCRWCTPSGLDTTEYLKSYASKQLSPEDLEGSNDDLCYCLECVVEYHKARERLPSLHR
VLLELETSRLIAHIEKSMREEAGEDDELFIVDENGETQLPVYVGPDFENNLRVPLLEMLK
YPYLLLHEKVSELCVEVLCRMEESHASFQIFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYRSSVIEKGKLILLPSHLYDNTNYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEADDDSTDPFWPALHCFMVILDQ
LGAKVWGQLIDPVQAFQTIINSVSYNNEIKNIRNSFVRTKSESKTNYDDEMVTCSQIVYT
YNTEKPQKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGRDMRVHDSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILNERIQRCDKVSEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCAKLPAIAFTRCTEKAAGSYARGSSTASLQASNSVQHACVQLIRSLL
REGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLNIQETQELQVCLKQVIRNLKSRAVNVS
VSVENNANSTALPTVSLKQEKSTPGDKMSVHGRENLCSPVAFISKEGEDGRCQDNSFTAR
NRAWEEDCTDSSKNSKSLTSTDCLLVNIKKEPKDLITQQCKCLQKSFAKEMHGKVQENRN
SDLMSGNCDVGNQGFNTSIQSSNSRGSGVLENKREAEAVSPMCLSAQTSVDSPEDVYSSD
VKGRKVSPSSSSEFKEDAHRLVCLKMKMPNTEGHSRLLTPIVDLKNCGSAASASEAEQPV
FCAGSSCMRKDCCKHQGVNAVGENEDRESANVSRSSESTWEKSAFQYGLVSKIQERREMP
LDCFSFAKNQPGMQGNKDNSILLANISDTVVQNVSTKDDSSSLLKSVRLKDQEQPNLRDL
LKCDRKGQISKTSCTVANSVSGHIPSSFENKGGTSNAALPVSPLATKCESSERLIVCSKY
FKRENDLEGNEEECFVRMVSGDNTLTNSQLDKDLSKLSLAAYAKSVNFPSQSSQESSMHN
NTCDVKRKVKSAVRSSNSAQSNLTLYDTDSHGNKTIIILDSSDEENNVTINKETKEINEN
TCPEKQPLSEMQHDVTHSKSESKMPNSPLPLEDCDSQYFEFETEVDVFSVWQDTQEYKQD
GLSTSVGSSHSDGLLKDHTNEWGYDTDYVSDDAVEKETNGTGEEINTSHQKETDSTEVTN
SALQEFSAKENTKDQVENSTDKTTVDKDLIQNADLTEPRASTSNISLASKLALKKSTLSP
RKNITKSKVARTIQRSPKATALNTTQTKKLLQSTLKKIQPGRTTPAVVPPKKARQCPAPT
STVEKLGLKKAPRKAFELSQRSLDSVAELRSYGKVAGKVGGVQRGKLKRAAHPSLSTQIN
KKMLACQELQFLKQTRLSKSVRVKNISRSSEDRSKKASTMDTKSVKQKAKCLDKPSAEKQ
EEKKPGETFYPSVDERERIASISVEKEAVQTTLVSGCSDSSRAKDCDVMIPPALMDSSPC
SAAVAGDAKGKPEEGCIVQPEFGMATSKENECKPGENDDDDDDLFLTQLDPVDMELCSQD
EDAVDSSIATTRTEEMEIDSTENLQQNEPLTVVKCKFKDCTGKVEKIGDCCSKHSAANSE
SDHLFAKPSLPPRKPSTTKIFSSVSSSRNAAFSKDLEDVEKQPQALKSRASVAKPAVLRP
PSEKAVPTGNQTCKTPGSSNIPQPCISNNVLQPRNTHINNASNISRRPAREEHCSSFLGA
QQHDHNIFVKEVLKWTYEMFANSMQFGPPNTLVQSVVASVPIRFQGYNDYFNTFFPLMML
NAFETLAQEWVENQKMKDRTYYLYLQNFCADLNTAEFIAYFEENDLTKQLHPKEDDLIFL
VGQKKKDAFGEDSEVEEHLVNHVGLVRRFSRASGCLTRQIEQHIVCHLSVQTRGNLSFFI
NNQVKCVVVGSLVPTQRSFKGLLLLSRSPLAKPIINPSYSDFCPRDLPVASENAAFSMNE
YNEDQKRAIETAYAMVKQHPGLAKICLIHGPPGTGKSKTIVGLLSRVLSENIRNEKTNKK
NARMKQNRFLVCAPSNAAVDELMKKIIIAFKEKCQNKQEPLGNCGDVKLVRLGAERSINS
EVRAFSLDKQVEHRMKRKPTDRDQDIQKKKAALDEKLDMLSRQRAMHRCEKRESQMLDDE
IGRLSKERQQLASQLKEVRGHSQKVQTDIILESDIICCTLSTSGGGLLESAFWRQGPFSC
VIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTIKSIKAQEYGYGQSLMARLQRHL
EEQVQNNLLRRLPVVQLTVQYRMHPDICLFPSSYVYGRTLKTDKATEENRCSSEWPFQPY
LVFDVGDGREERDKDSFSNPQEVKLVLEIIKTIKEKRKDLGLRRIGIITPYSAQKKKIQE
ELDRVFKNNSPGEVDTVDAFQGREKDCIIVTCVRAHSSKGSIGFLASLQRLNVTITRARF
SLFILGRLKTLMENKDWNKLIQDAQRRGAIIKTSDKSYKKDALKILKLKQMPQNPLCQLP
TKAGTTKAPLAQATSGRKVGEPANPREASRPRELAAGPGHAVPHGSRMSQQPQGTQVADS
RRSSISAPVGAAALPADKEKPRDPRLASIASRTGAKGKEQDPKHSSQSAQSSRESTLQQR
LDVSSAARDLISRTEPSRKHQQAKGQCEVPSTLPYAAKLEGDRRAPLPEHHSTASSERGQ
GSSSKWNKDPRTSMRRTSESSSVSTDSSSAKRRRTSH
NT seq
8394 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtatgtcgatggtgtacaccgagtggtcttgataccactgaatacctgaagagc
tatgcatctaaacagttgtccccagaagatcttgaaggttccaacgatgacctctgctac
tgcttggagtgcgtggttgaataccacaaagcaagggagagattgccaagcttgcatcgg
gttttattggaattggaaacctcccgtctcatagcccacattgaaaaatccatgagagaa
gaagctggagaagatgatgagttgtttatagtggatgagaatggagagacacagctgcct
gtttatgttggcccagattttgagaataacctgagagtgccacttctagaaatgctgaaa
tacccgtatctgctgctgcatgagaaagtcagtgagctttgtgtggaagtgctgtgtaga
atggaagaaagtcacgcctcctttcagatttttgagaaatatccaggaatttatctattt
ttggtacacccaaatgaagtgattcgtcgttgggccatcctaacagcaaggaatttaggg
aaggttgacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaagtt
attgaactggggctttttgagagtccagatatttacagatcttcagtgatcgaaaaggga
aaactcattcttctgccatcccatttatatgataataccaactacaagaactattggctg
ggcatttgtatgttgctaacagtgctggaagaacaagctatggactccttgttactgggc
ccagacaaacagaatgacttcatgcagtctatacttcacaccatggagaaggaagcagat
gatgattccactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
cttggagctaaagtatggggtcagcttattgatcctgtccaggcctttcaaacgattatc
aacagtgtgagctataacaatgaaataaagaatatacgcaatagctttgtaaggacgaaa
tctgaatcaaagacaaactacgatgatgaaatggttacttgcagtcagattgtatatact
tataacacagaaaagcctcaaaaggatactgggtggaaaactgctatttgtccggactac
tgccccaacatgtatgaagatatgcaaacactggctaatgttcttcagtctgatattggc
agagatatgcgtgtccatgacagcacttttctgtggttcatcccttttgttcagtcacta
atggatctcaaggacttgggtgtagcatatatagtagaggtcattcactacctctgttcg
gaaatcaaggatattctcaatgaaagaatccagcggtgtgacaaagtttctgaatttttt
ctgttgatcttggtatcgattattgaactacacagaaacaaaaagtgcctgcacttgctg
tggattagctctcaagaatgggtggaagcagtggtgagatgtgctaagcttccagcaatt
gcatttacccggtgtactgaaaaagcagctggcagctatgcaagaggttcatcgacagca
tctttacaggcttctaactctgtgcagcatgcttgtgtgcagttgatacgcagccttctt
agagaaggctatcagatcggtcagcatgcactgtgcaagcaatatttagacaaactcaat
ctccttctgcgaggaaatctatctttaggttggcagctgaacatccaagaaactcaggaa
ttacaagtatgtttaaagcaggttataagaaacttaaagagcagagcagtgaatgtgtct
gtatctgtagaaaacaatgcaaactctacagctttacccactgtttctttgaagcaagag
aagagcacgcctggtgataagatgagtgtgcatggcagagagaatctttgttcaccagtt
gccttcatatcaaaggaaggtgaggatggacgttgtcaagataactctttcacagccaga
aatcgtgcctgggaagaggattgtacagattcatctaaaaattcaaaatctttgacctct
acagactgcctcttggtaaatattaaaaaggagcctaaggacttgataactcagcagtgc
aaatgcctgcagaaatcatttgcaaaagaaatgcatgggaaagttcaggaaaataggaac
agtgatcttatgtcagggaactgtgatgtgggtaatcagggctttaatacaagtattcag
agttcaaattctagaggaagtggagtgttggaaaacaaacgggaagcagaagccgtatca
ccaatgtgtctgtctgctcagactagtgttgattctccagaggatgtttacagctcagat
gtaaagggaagaaaagtgtctcctagttcctcttcagagtttaaagaagatgcgcataga
cttgtgtgtctgaaaatgaagatgcccaatactgaagggcactctagactattaactcca
atagtggatttgaaaaactgtggttctgcagcaagtgcttcagaagcagagcaacctgtg
ttttgcgctggtagttcgtgtatgaggaaagactgttgcaagcatcagggagtaaacgct
gtgggtgaaaatgaagacagagaatcggcaaatgtttcaaggagttctgaaagtacatgg
gagaaaagtgcttttcaatacgggctggtctccaaaatccaggaacgaagagagatgcca
cttgactgcttcagctttgctaaaaatcaacctggcatgcaaggaaacaaagataacagt
attttgcttgcaaatatcagtgacaccgtagtgcagaacgtatccaccaaagatgactca
agttcgttgttgaagtctgtccgtcttaaagaccaagaacagcctaatttaagagaccta
cttaaatgtgaccgtaaaggtcaaatttcaaagacatcctgtacagttgcaaattcagtg
agtggtcacattccatctagctttgaaaataagggaggtacgtccaatgctgctcttcca
gtcagtccactggcaaccaaatgtgaatcaagtgaaaggttgatagtgtgctcaaaatat
ttcaagcgagaaaacgatttagaggggaatgaagaagagtgttttgtgaggatggtttct
ggagataatactttaacaaactcccagcttgataaagatctcagtaaattgtcattagct
gcttatgccaaaagtgtcaattttccgtcacagtcgagtcaggaaagttcaatgcataat
aatacatgtgatgttaaaaggaaagtgaaaagtgctgtaagatcctccaacagtgcccag
agtaacctgactctctatgatacagatagccatggcaataaaaccattataattttagac
tcttctgatgaagaaaacaatgttaccatcaataaggaaacaaaagaaattaatgaaaat
acatgtcctgaaaagcaacctttgtcagaaatgcagcatgatgttacacatagcaaatca
gaatcaaagatgccaaactctcccttgcctcttgaagactgtgactctcagtactttgag
tttgaaacagaagttgatgtattttcagtttggcaagatactcaagagtataaacaagac
gggctttcaacatcagttggtagcagtcattcagatggcttactgaaggatcacacaaat
gaatggggttatgatacagattatgtaagtgatgatgctgtggaaaaagaaacaaacggg
acaggggaggagataaacacttctcaccagaaagaaactgatagtacagaagtaactaat
tcagctttgcaagagttttctgctaaagaaaatacaaaagatcaagtggagaattctact
gacaaaactacagttgataaagacttaattcagaatgcggatttgactgaacccagagct
tctacatccaatatctccttagcttcaaagctggcactgaagaaaagtactctgagccca
cgtaaaaatataactaaatctaaggtagcaagaactattcagagaagtcctaaagcaaca
gctctgaatacaacacaaactaaaaaactacttcaaagcacgttaaaaaaaattcagcct
ggcaggacaacgcctgctgttgttcctccaaagaaagctcgacagtgtcctgcaccaaca
tcaacagtggaaaagcttggtctgaaaaaggcaccccgcaaagcatttgaattatcccag
cgctcgttagatagtgtagctgaattgcgtagttatggaaaagttgcagggaaggttgga
ggtgtgcagagggggaaacttaaacgagctgctcatccgagtttatctacacaaattaac
aaaaaaatgctagcttgccaagaacttcagtttttaaagcaaacaaggctcagcaaaagc
gttcgagtgaaaaatatttcgaggagttctgaggatagaagcaaaaaagcatccacaatg
gatacaaagtctgtcaaacaaaaggctaaatgtcttgataaaccatctgctgaaaagcaa
gaagaaaaaaaaccaggagagaccttttatccatctgttgatgagagagaacgtatcgcc
agcatctctgtggagaaggaggctgtgcaaactacacttgtctctggttgttcagactcg
agcagagcaaaagactgtgatgtaatgattcctcctgcacttatggattcaagtccgtgt
tctgctgcagttgctggagatgctaaaggtaaaccagaagaaggttgcatcgtccagcct
gaatttggaatggcaacttcaaaagaaaatgagtgcaaaccaggtgaaaacgacgatgat
gatgatgatttatttttaactcagttagatcctgtggatatggaattgtgttcacaggat
gaagatgctgtagacagttctatagctactacaagaacagaggaaatggaaatagatagt
actgaaaaccttcagcagaatgagcccttgactgttgtgaaatgtaagttcaaagactgt
acggggaaagtggaaaaaataggagactgctgtagcaagcattcggccgccaattcagaa
tcagatcacctgtttgctaagccttctttgccacctagaaagccttccactactaaaatt
ttcagctcagtaagttcttcacgaaatgcagccttcagcaaagatcttgaagatgttgaa
aaacaaccacaggctttaaaaagcagagctagcgttgcaaaacccgctgtgctgagacca
ccaagtgaaaaggctgtgccaacaggaaatcaaacatgcaagactccaggttccagtaat
attcctcaaccttgtatttctaataacgttctccaaccacgaaatacacacatcaacaat
gcttcaaatatttccagacggcctgcccgagaagagcactgttcttcttttcttggcgct
cagcagcacgatcataatatttttgttaaggaggttctgaaatggacttacgaaatgttt
gcaaactccatgcagtttggacctccaaatactctcgtacaatctgtagtcgcctctgtt
cccatcagatttcagggatacaatgactattttaatacgtttttccccttgatgatgcta
aacgcctttgaaacactggcacaagagtgggtagaaaaccagaagatgaaagacaggact
tactacttgtacttacagaacttctgtgcggatttgaatacggcagagtttatagcttat
tttgaggagaacgatttgacaaagcagctccatccaaaggaggatgacttaatctttctg
gtgggccagaagaagaaggatgcctttggggaagacagcgaggtggaggagcacctggtg
aatcacgttggtcttgtgaggagattttctcgtgcgtctggctgcttaacgagacaaata
gagcagcatattgtctgtcatctttctgtacaaactcgaggaaatttgtcattcttcata
aataatcaagtgaagtgtgtggtggttggctccttagtgcccacacagcgatcattcaaa
ggtctgctactgctgagcaggagtcccttggctaaacccatcataaatccaagttacagt
gatttctgtccaagagatttgcctgtagcttcagaaaatgctgcgttttctatgaatgaa
tacaacgaagatcagaagagagccattgaaacagcttatgctatggtaaagcaacatcca
gggcttgccaaaatctgtcttatccatgggccacctggaactgggaagtccaaaactata
gttggacttttgtctcgtgttttgagtgagaacattaggaatgagaaaacaaataaaaaa
aacgccaggatgaagcagaaccgtttcctggtttgcgccccatccaatgctgccgttgat
gagctcatgaaaaagatcatcattgcatttaaggaaaaatgccaaaacaagcaggagcct
ttgggaaactgcggtgatgtcaaattagtgcgactgggtgctgaaagatcaatcaacagt
gaagtccgggcttttagcctggataaacaagttgaacatagaatgaaacgaaagccaact
gaccgggaccaggacattcagaagaaaaaagcagctctggatgagaagctggacatgctg
tctcgtcagcgtgccatgcacagatgtgagaagagggagagtcaaatgctagatgatgaa
attggcagactttcaaaggagagacagcaacttgcttctcagctgaaagaggttcgggga
cactctcagaaggtacagacagatatcatcttggagtctgatataatctgctgcacactg
agcacaagcggaggagggctgctggaatctgctttctggcggcaaggacctttcagctgt
gtcattgtggatgaggcagggcagtcctgtgaagttgaaacactgattccactgattcat
cgctgtaataaacttgtccttgttggagatcccaggcagctccctcccactataaaatca
ataaaagctcaggaatatggctatggtcagtccttaatggcacgcctgcagagacacctg
gaagaacaagtgcagaataatcttctgcgacgtctgccagtggtgcagctgaccgtgcag
taccgaatgcaccctgacatctgccttttcccatccagttatgtttatggcaggactcta
aagactgacaaagcaacagaagagaacagatgttcttcggagtggccattccagccctat
cttgtttttgatgtaggagatggccgtgaggagcgtgacaaagactctttcagtaatccc
caagaagtgaaactggtgttagaaataattaaaacaattaaagaaaagaggaaggatctg
ggtcttcgtcgcattgggataattacaccttacagtgcacagaaaaagaaaattcaagag
gaactcgacagagtgttcaagaataacagcccaggagaagtggatacagtggatgcattt
cagggacgagagaaggattgcatcatagtgacgtgtgtccgggcacacagctccaaaggc
tccattgggtttctggcaagtcttcagcgtttgaatgttacaattacccgagccagattc
agcctcttcatccttggaagactgaaaacactcatggagaataaagactggaacaagttg
attcaggacgctcagagaagaggtgcaattatcaagacatcagacaaaagctacaagaaa
gatgcccttaagattctgaagctcaaacaaatgccacagaatcccctgtgccagcttccc
accaaagcagggacaacgaaagctcctctggcacaggcaacttctggtaggaaggtgggt
gagcctgcaaatccaagggaggccagcagaccacgggaacttgctgctggtcctggccat
gcagtgccacatggaagcagaatgtcccagcagccacagggaactcaggttgcagactcc
cggagatccagcatctctgcaccagtgggggcagcagcactccctgctgataaagagaaa
ccgcgcgacccaaggctggcaagtatagccagcagaactggagctaaagggaaggagcag
gacccaaaacacagcagtcagtcagcccagagcagtcgagaatcaacgctgcagcagcgt
ctggatgtgtcctcagctgccagggacctgatttccagaacggagccttctaggaagcac
caacaagcaaagggccagtgtgaggtgccttccacattgccttatgcagctaaactagag
ggcgacaggagagctccgttgccagaacaccattcaacagccagcagtgaacgaggtcaa
ggtagtagcagtaagtggaacaaagacccacgtacttcaatgaggagaacatcagagtca
tcatcagtgagcacagactccagcagtgccaagcgaagaaggacctctcactga
DBGET
integrated database retrieval system
