Lagopus muta (rock ptarmigan): 125702458
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Entry
125702458 CDS
T09141
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125702458 (RC3H2)
04121 Ubiquitin system [BR:
lmut04121
]
125702458 (RC3H2)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125702458 (RC3H2)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125702458 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
125702458
NCBI-ProteinID:
XP_048821706
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Position
19:complement(8767668..8795773)
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AA seq
1191 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTTGSVISVI
GSPEATGKMVPSTNGIANLESGVPQLIPRCADTSLRALENTKKAGKSGANGQNVSGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSQFVPRVPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESTLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQW
AQYHTQKTPLVSSALPMATPSPTPPSPLFSVDFNTEFSESVSDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRMHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSSYGSDSA
SSARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGETDYSEDCADTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQDDQLLNGTTVENGHPLKQHQKESMEQKRQSLGEDLVILEEQKTILPVTSCFS
QPITTSVSNASCLPISTSVSVGSLILKTAHIMSEDKNDFLKPVANGRMVNS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaacgaa
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacactgtctgtaagacc
tgcctgaacaagcttcatcgcaaggcatgtcctttcgaccagactgccatcaacacagac
atcgatgtgcttcctgtaaactttgcactcctccagttagttggagcccaggtacctgat
catcagacagtgaagttgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgctagc
ttgaatcagagtgcactgagccgtccaatgcaaaggaagcttgtgacactggtgaactgt
cagctggtagaggaagagggtcgagttagggctatgagagcagctcgatcgctgggcgag
agaaccgtgacagaattgatcttgcagcaccaaaatcctcagcagctttctgccaatctt
tgggctgctgtcagggcacgaggatgtcagtttctagggccagctatgcaagaggaggca
ctgaaacttgtattactggcactggaagatggctccgcactctcaagaaaagttctggta
ctttttgtggtgcaaaggctagaaccaagatttcctcaggcctctaaaacaagcattggt
catgttgtgcagctactgtatagagcatcatgctttaaggtcactaaaagggatgaagat
tcttctctgatgcaacttaaagaagagtttcggagttatgaggctttgcggagagaacat
gatgcccaaattgttcacattgccatggaagcaggacttcgaatatcaccagaacagtgg
tcttcccttctttatggcgacttggcacataaatctcacatgcaatccattatcgacaag
ctccaatctccagagtcttttgcaaagagcgtgcaagaattgacgatcgtcttgcagcgc
acaggtgatcctgcaaacttaaacaggctgagacctcatttagagctcctggcaaacata
gacccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggtggct
gtgaagacggtggtacatgggctggtggatttcattcagaattacagcagaaaaggccac
gaaactccacagccacaaccaaatagcaaatacaaaacaagtatgtgccgagaccttcga
caacaagggggatgtccaagaggaaccaactgtacatttgctcattctcaggaagagctt
gaaaaatatcgcttgaggaacaaaaaaatcagtgcaacagtgagaacattcccccttcta
aataaagttggcgttaatagcaccgtctcaaccactacaggaagcgtaatttctgtcata
ggaagccctgaagcaacaggaaagatggtgccaagtactaatggaatagctaatctagaa
agtggtgttccccaattgattcctcgctgtgcagacacctccttaagagctttggagaac
acaaagaaggcagggaagagtggagccaatggccagaatgtttctggatcccctacagaa
tcactacctgagaataaaattggttctccacccaagactcctgtaagccaggcagcagct
acctcagctggtcctcctaatattggaacagaagtgaattctgtgcctccaaaatccagc
cagtttgttcccagagtacctgtttaccctccacattctgataacgttcagtatttccaa
gatcccagaactcagctgtcgtatgaagttccacagtacccacagacaggatactatcca
ccacctccaacagtaccagctggcgtggctccctgtgttcctcgatttgtgaggtccaat
aatgttccagaatccaccctcccacctgcttctgtgccatatgccgaccattacagtacg
tttccacctcgagatcgactgaattctccttaccaacctcctcctccgcagccgtatgga
ccagttcctcccgtcccttctggaatgtatgctccagtttatgacagcaggcgcatctgg
cgcccgcagatgtacccacgggatgatattattaggagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagacatcattacgtgagagatacaactctttggatggc
tattactccgtggcttgccaacctccaaatgaacagaggactgtgcctttaccaagggag
ccttgtggtcacttgaagactgggtatgatgaacaattacgacggaagccagaacagtgg
gcacaatatcacacacagaaaactcctcttgtatcgtcagcccttcctatggcaacgcca
tctccaacaccaccttctcctctcttcagtgtagatttcaacacagagttctctgagagt
gtcagtgatttgagtggaactaaatttgaggaagaccatctctctcactattcaccgtgg
tcttgtggcactattggttcttgtataaatgctatcgactcagagcccaaggatgtgatt
gccaattcaaatgccgtgttaatggatttggacagcggggatgttaaaaggagaatgcat
ttatttgaaactcagagaagggcaaaggaagaagatcctataatcccatttagtgatgga
ccgatcatttccaagtggggtgcaatctccaggtcatcccgcacgggttatcacacaaca
gatccaattcaggccactgcttcccaaggaagtgcaactaagcccatcagtgtatcagat
tacgttccttatgtcaatgctgttgactcaagatggagttcttatggctcagattcagct
tcatcagcacgttatgcagagcgggacagattcatagttacagatttgtctggtcacaga
aagcattccagcactggagatctattaagtattgaattacagcaggccaaaagtaactca
ttgttacttcagagagaggcaaatgcactagccatgcaacagaagtggaattctctagat
gaaggcagtcgacttaccttaaatcttttaagcaaggaaattgatttgaggaatggtgag
actgattatagtgaagactgtgctgatacaaagccagatcgagacatcgagttggagcta
tctgcccttgatacagatgaacctgatgggcagggtgaacaaatagaagagattctggat
atacagctaggtatcagttctcaagatgatcagctgctcaatggaacaactgtagagaat
gggcatccactaaagcagcaccagaaagaatctatggaacagaagagacaaagtttaggt
gaagaccttgtgattctggaggagcagaaaacaatcctgcccgtaacttcttgcttcagt
cagccgatcacaacatctgttagcaatgcaagctgcctgcccatcagcacatcagtcagt
gttggcagcctcattttgaaaactgctcacattatgtctgaggataaaaatgacttttta
aagcctgttgcaaatggcaggatggttaacagctga
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