Lagopus muta (rock ptarmigan): 125702486
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Entry
125702486 CDS
T09141
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125702486 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125702486 (PRPF4)
Spliceosome [BR:
lmut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
125702486 (PRPF4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
125702486
NCBI-ProteinID:
XP_048821777
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Position
19:135441..143369
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AA seq
537 aa
AA seq
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MASVRAPVARGGARPAPVRAPAPPEPTKSKPSEEGDAPPAKRAPIFYGSLEEKERERLAK
GESGLLGKEGMKAALEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDD
SEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQT
WYHEGPRSLKTARLWLANYSLPRAVKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFC
SQIGDDRPLSYCHFSPNSKLLTTACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKA
TVSLDKKDVNLASCAADGSVKLWSLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDH
SWRLWDLEAQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG
HLKEIYGLNFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPNHGNFL
LTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgtgcgggcaccggtagcgcgcggcggggctcggcccgctcctgtaagggcc
cccgcgccgcctgagcccacgaagagcaaaccatcagaggagggcgatgctccccctgcc
aagagagcacccatcttctatggcagcctggaggagaaggagcgggagcggctggcaaag
ggagagtctgggcttctggggaaggaggggatgaaggctgctctcgaggccggcaacatc
aacatcagcagcggtgaggtctttgatttggaggatcacatgagcgagcggcaggcggaa
gtcttggctgagtttgagcgcaggaagcgagcccggcaaatcaacgtctccacggatgac
tctgaagtgaaagcctgcctgcgagccctcggggagcccataacgctctttggagaaggt
cctgctgagaggagggagagattaagaaatatcctctcagtggtcggcacagatgcattg
aaaaagacaaggaaagatgacgacagatctaaaaagtctaaagaagagtatcagcagact
tggtaccatgaaggaccacgtagtctaaaaacagcaaggctgtggcttgctaactattcg
cttcccagggcagtgaagcgtctagaagaagcccggctgctcaaagagattccagaggca
accaggacatcgcagagacaagaactacacaagtccctacgatccttgaataacttctgc
agtcagattggggatgatcgcccgctgtcctactgccacttcagccccaactccaaactc
ctgactactgcctgttggagtggactgtgcaagctgtggtccgtgcctgactgcaacctt
gttcacaccttacgaggacacagcaccaatgtaggagcaatagtcttccatcccaaagcc
accgtctccctcgacaagaaggacgtcaacttggcctcgtgtgcagctgatggttctgtc
aaactctggagccttgaaagtgatgagccagtggcagatattgaaggacacagcatgaga
gtggcacgtgtgatgtggcacccctctgggaggttcctgggcactacttgttacgatcac
tcgtggcgcttgtgggacttggaagcccaggaagagatccttcatcaggaggggcacagc
aaaggggtctatgacatcgcctttcacacggatgggtctcttgctgggactggtggactg
gatgcttttggccgagtgtgggatttgcgcaccgggcgttgtatcatgtttctggaaggc
cacctgaaagagatctatggacttaacttctccccaaatggataccacgttgcaactggc
agtggtgacaatacttgcaaggtatgggacctccgtcagaggaagtgcatctacaccatt
cctgcccatcagaacctggtgactggggtgaaatttgaacccaatcatggtaacttcctg
ttgacgggcgcttacgacaacaccgcaaagatctggactcaccctggctggtcccctctg
aaaacactggctggtcatgagggaaaggtgatgggactggatatctccctcgatgggcag
ctgatagcaacgtgctcctatgacagaaccttcaagttgtggacagcagagtag
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