Lagopus muta (rock ptarmigan): 125702542
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Entry
125702542 CDS
T09141
Symbol
NOTCH1
Name
(RefSeq) neurogenic locus notch homolog protein 1 isoform X1
KO
K02599
Notch 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
125702542 (NOTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
EGF_2
Ank
Notch
NOD
NODP
Ank_5
Ank_3
Ank_4
EGF_3
cEGF
Motif
Other DBs
NCBI-GeneID:
125702542
NCBI-ProteinID:
XP_048821920
LinkDB
All DBs
Position
19:7801353..7834961
Genome browser
AA seq
2550 aa
AA seq
DB search
MKRLLATGLLLALLPAPTRGVRCTQLAESCLNGGKCETFLNGTEVCQCSSAHVGERCQLP
NPCLSSPCKNAGTCIPLVRGSTADYSCVCRLGFTDELCLTPLDNACLNNPCRNGGTCDLV
TLSEYKCRCPPGWSGKTCQQADPCASNPCANGGQCVPFEVHYICSCTAGFHGANCKQDVN
ECNISPPVCKNGGSCTNEVGTYQCSCKPAYTGQNCEHLYVPCNPSPCQNGGTCRQTGDTT
YDCTCLPGFAGQNCEENIDDCPGNNCRNGGTCVDGVNTYNCQCPPEWTGQYCTEDVDECQ
LMPNACQNGGTCHNNHGGYNCVCVNGWTGEDCSENIDDCAMAACFQGATCHDRVASFYCE
CPHGRTGLLCHLDDACISNPCNEGSNCDTNPVNGKAICTCPSGYMGPACNQDVDECSLGA
NPCEHAGKCINTQGSFQCQCLQGYSGPRCEIDVNECLSNPCQNDATCLDQIGEFQCICMP
GYEGVYCEINTDECASSPCLHNGNCLDKINEFHCECPTGFNGHLCQFDIDECASTPCKNG
AKCVDGPNTYSCECSEGFSGVHCEIDIDECNPDPCHYGTCKDSIAAFTCLCQPGYTGHRC
DININECQSQPCRNGGTCQDRDNAYNCLCLKGTTGPNCEINLDDCASNPCDYGKCIDKIN
GYECTCEPGYTGRMCNINIDECASNPCHNGGTCKDGINGFTCLCPEGFHDPKCLSEVNEC
NSNPCIHGRCHDGLNGYRCDCDPGWSGTNCDINNNECESNPCMNGGTCKDMTSGYICTCR
EGFSGPNCQTNINECASNPCLNQGTCIDDVAGYTCNCLLPYTGATCEDVLAPCAGGPCKN
GGECRESEDYKRFSCSCPPGWQGQTCEIDINECVKSPCRNGATCQNTNGSYRCLCRLGFA
GRNCDTDIDDCQPNPCHNGGSCSDGVGTFFCECLAGFRGLKCEEDINECASNPCKNGANC
TDCVNSYTCTCPSGFSGIHCENNTPDCTESSCFNGGTCVDGINTFTCLCPSGFTGSYCEH
NINECDSKPCLNGGTCQDSYGTYKCTCPQGYTGLNCQNLVRWCDSSPCKNGGKCWQTNNL
YRCECNSGWTGLYCDVPSVSCEVAAKQQGIDVAHLCRNSGLCVDSGNTHFCRCQAGYTGS
YCEEQVDECSPNPCQNGATCTDYLGGYSCECVAGYHGVNCSEEINECLSHPCQNGGTCID
LINTYKCSCPRGTQGVHCEINVDDCSPFFDPVTLGPKCFNNGKCTDRVGGYSCICPPGFV
GERCEGDVNECLSNPCDARGTQNCVQRVNDYKCECRPGYAGRRCDTVVDGCKGKPCRNGG
TCAVASNTGRGFICKCPPGFVGATCENDSHTCGTLHCLNGGTCISMHKSSKCVCAAAFTG
PECQYPASSPCISNPCYNGGTCEFLSDASPYYHCNCPANFNGLNCHILDFDFPGGFGQDI
IPPKIEEKCEIAVCASYAGNKICDGKCNNHACGWDGGDCSLNFNDPWKNCSQSLQCWKYF
NDGKCDSQCNNAGCLYDGFDCQKYEGQCNPLYDQYCKDHFSDGHCDQGCNNFECEWDGLD
CANNMPEKLADGTLVVVVLITPENLKNNSFNFLRELSRVLHTNVVFKKNAKGEYMIFPYY
GNEEELKKHYIKRSTEDWADMSSAVINKVKSSFYSRAGRRQKRELDQMDIRGSIVYLEID
NRQCIQSSSQCFQSATDVAAFLGALASLGNLNIPYKIEAVKSETAEPARNSQLYPMYVVL
AALVLLAFIGLGVLVSRKRRREHGQLWFPEGFKVTESSKKKRREPLGEDSVGLKPLKNAS
DGTLMDDNQNEWGDEETLDTKKFRFEEQAMLPDTDDQTDHRQWTQQHLDAADLRISSMAP
TPPQGEIDADCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEDDAPAVISDFIYQGASL
HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINCHADVNAVDDLGKSALHWAAAVNN
VEAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI
AQERMHHDIVRLLDEYNLVRSPPLHSGPLGAPTLSPPLCSPSSYIGNLKPAVQGKKARKP
STKGLSCNGKDSKDLKARRKKSQDGKGCLLDNSSVLSPVDSLESPHGYLSDVASPPLMTS
PFQQSPSMPLNHLPGMPDAHMSINHLNMAGKQEMTLGGSGRMAFEAVPPRLSHLPVSSPS
TAMSNAPMSFSVGGAAGLSGQCDWLSRLQSGMVQNQYSAMRGGMQPGTHQQAQNLQHGMM
SSLHNGLPSTSLSQMMSYQAMPSTRLASQPHLLQNQQMQQMQQPGMQQASMQPQPGMQQP
QQQPQQQPQPQQHHNPGSNASGHMGQNFLGTELSQPDMQPVSSSAMAVHTILPQDSQLLP
TSLPSSLAQPMTTTQFLTPPSQHSYSSPLDNTPSHQLQVPDHPFLTPSPESPDQWSSSSP
HSNVSDWSEGISSPPTSMQSQMGHIPEAFK
NT seq
7653 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggctcttggccacggggctcctgctggccctgctgcccgccccgacgcgaggt
gtgcggtgcacgcagctggccgaatcctgcctcaacgggggcaagtgtgaaacattcctc
aatgggacggaagtgtgccagtgcagcagtgcccacgtgggcgagcgatgccagctgccc
aacccctgcctcagctccccctgcaagaacgccggcacctgcatccccctggtgcgtggc
agcaccgccgactacagctgcgtctgccgcctgggcttcaccgacgagctctgcctgaca
cctctggacaacgcctgtctcaacaacccctgccgcaacgggggcacctgtgacctggtg
acactcagcgagtacaagtgccgctgcccgccaggctggtcaggtaaaacctgccagcag
gccgatccctgcgcctccaacccctgtgccaacgggggtcagtgcgtcccctttgaagtc
cactacatctgcagctgcacggccggcttccacggggccaactgcaagcaggacgtgaac
gaatgcaacatctcaccacctgtctgcaagaatggtggcagctgcaccaacgaggtgggc
acctaccagtgctcctgcaagccagcctacaccgggcagaactgcgagcatctctatgtg
ccctgcaacccctcaccctgccagaatgggggcacgtgccgtcagactggggacaccacc
tacgactgcacctgtctgccagggttcgccgggcagaactgcgaggagaacatcgacgac
tgtccagggaacaactgcagaaatgggggcacctgcgtggatggcgtcaacacctataac
tgccagtgcccgcccgagtggacaggtcagtactgcaccgaggatgtggatgagtgccag
ctgatgcccaatgcctgccagaacgggggcacctgccacaacaaccatggtggctacaac
tgtgtctgtgtcaatggctggacgggcgaggactgcagtgagaacatcgatgactgtgcc
atggccgcctgcttccagggggccacctgccacgaccgggtggcctccttctactgcgag
tgtccccatgggcgcacaggtttgctgtgccacctggatgatgcttgcatcagcaacccc
tgcaacgagggctccaactgtgataccaaccctgtcaatggcaaagccatctgcacgtgt
ccttcggggtacatggggccggcatgcaaccaggacgtggatgagtgctcactgggagcc
aacccctgtgagcacgcagggaaatgcatcaacacccaggggtccttccagtgccagtgt
ctgcagggctactcaggcccccgctgtgagatcgatgtcaatgagtgtctctccaacccc
tgccagaacgatgccacctgcctggaccagattggggagttccagtgcatctgcatgcct
ggatacgagggcgtctactgtgaaatcaacacagatgagtgtgccagcagcccctgcctt
cacaatggcaactgcctggataagatcaacgagttccactgcgagtgtcccaccgggttc
aatgggcacctgtgccagttcgacatcgatgagtgcgccagcaccccctgcaagaatggg
gccaagtgcgtggatggccccaacacctacagctgcgagtgctccgaaggtttctcgggt
gtacactgtgagatcgacattgatgagtgcaaccctgacccgtgccactatgggacctgc
aaggacagcatcgccgccttcacctgcctctgccagcccggctacacgggccaccgctgc
gacatcaacatcaatgagtgccagagccaaccctgcagaaatggggggacctgccaggac
agggacaacgcctacaattgcctgtgcctcaaggggaccacggggcccaactgtgagatc
aacctggacgactgtgccagcaacccctgtgactatggcaagtgcatcgacaagatcaac
ggctacgagtgcacctgtgagccggggtacacagggcgcatgtgcaacatcaacatcgat
gaatgtgccagcaatccgtgccacaatgggggcacatgcaaggatggcatcaatggcttc
acctgcctctgccccgagggcttccatgaccccaagtgcctgtccgaagtgaatgagtgc
aacagcaacccctgcatccacgggaggtgccacgatgggctgaacggttaccgctgtgat
tgcgacccgggctggagcggcacaaattgtgatatcaacaataatgagtgtgaatccaat
ccctgcatgaatggtggcacctgcaaggacatgaccagcggttacatctgcacctgcagg
gaagggttcagcggacccaactgccagaccaatatcaatgaatgtgcttccaacccgtgc
ctgaaccaaggcacgtgcattgacgatgtggccggctacacctgcaactgcctcctgccc
tacacaggagccacctgtgaggacgtgctggccccctgcgccggcggcccctgcaagaac
ggcggcgagtgccgggagtcggaggactacaagaggttctcgtgcagctgcccacctggc
tggcaaggccagacgtgcgagattgacatcaatgaatgcgtgaagagcccctgccgcaat
ggggccacgtgccagaacaccaacgggagctaccgctgcctgtgccggctgggcttcgca
ggccgcaactgtgacaccgacatcgacgactgccagcccaatccgtgccacaatggtggc
tcctgctcggatggcgtcgggacgttcttctgcgagtgcctggccggcttccgcgggctc
aagtgtgaggaggacatcaatgaatgtgccagcaacccctgcaagaacggggccaactgc
accgactgcgtcaacagctacacctgcacctgcccctccggcttcagcggcatccactgt
gagaacaacacacccgactgcactgagagctcctgcttcaatggggggacctgcgtggat
ggcatcaacaccttcacctgtctctgtccatccggcttcacgggcagctactgtgagcac
aacatcaacgagtgtgattccaagccctgcctgaatggaggcacgtgtcaggacagctat
gggacgtacaagtgcacctgtcctcagggatacactgggctcaactgccagaacttggtg
cgctggtgtgactcctcaccctgcaaaaatgggggcaagtgctggcagaccaacaacctg
taccgctgcgagtgcaacagtggctggacggggctctactgtgatgtccccagcgtctcc
tgcgaggtggctgcaaagcagcaaggtatcgacgtcgctcatctctgcaggaactcaggg
ctctgtgtggacagtggcaacactcacttctgccgctgccaggccggctacacgggcagc
tactgcgaggagcaagtggacgagtgctccccaaacccctgccagaacggagccacctgc
acggactacctggggggctattcctgtgagtgcgtggctggttatcatggagttaactgc
tcggaggagatcaatgagtgcttgtcccacccatgccagaatggaggaacctgtatcgat
ctcatcaatacctacaaatgctcctgccccagaggaactcaaggggtgcactgtgagatc
aatgtggatgactgcagccctttctttgatcctgtcaccttggggcccaagtgctttaac
aatggcaagtgcacggatcgggtaggtggctacagctgcatctgcccccctggctttgta
ggggagcgctgcgagggagacgtcaacgagtgcctctccaacccctgcgacgcgcgcggc
acccagaactgcgtgcagcgggtcaatgactacaaatgcgagtgccggcccggctacgca
gggcgccgctgtgacactgtggtggatggctgcaagggcaaaccttgcaggaatggggga
acgtgcgctgtggccagcaacaccggccgtggcttcatctgcaagtgccctccgggcttt
gtgggtgccacctgcgagaacgactcccacacctgcgggaccctgcactgcctgaatggt
ggcacctgcatctccatgcacaagagctccaagtgcgtgtgtgcagcagccttcacgggc
ccggagtgccaatacccggccagcagcccctgcatctccaacccctgctacaacgggggc
acctgcgagttcctcagcgatgcctccccttactaccactgcaactgccccgccaacttc
aacggcctcaactgccacatcctcgacttcgatttcccaggcggcttcgggcaggacatc
atcccacccaaaattgaggagaagtgtgagatcgccgtttgcgcgagctatgcaggcaat
aagatctgcgatgggaagtgcaacaaccacgcctgcggctgggatggcggtgactgctcg
ctcaatttcaatgacccctggaagaactgctcgcagtcgctgcagtgctggaagtacttc
aatgatggcaagtgtgactcgcagtgcaacaacgcgggctgcctgtatgatgggtttgac
tgccagaagtacgaggggcagtgcaaccccctgtacgaccagtactgtaaggaccacttc
tcagatggtcactgtgaccagggctgcaataactttgagtgtgagtgggacgggctggac
tgtgcaaacaacatgcctgagaagctggcggatggcacgctggtggtggtggtgctcatc
acccccgagaacctgaagaacaattccttcaacttcctgagggagctgagccgcgtgctg
cacaccaatgtggtcttcaagaagaacgccaagggagagtacatgatcttcccttactac
ggcaacgaggaggagctgaaaaagcactacatcaagaggtcaacggaggactgggcagat
atgtccagtgctgtcatcaacaaagtgaagagcagcttctactcgagggctggcaggagg
cagaagagagagctggatcagatggacatcagagggtccatcgtctacttggaaattgac
aaccggcagtgcatccagtcgtcctcccagtgcttccagagtgcaaccgatgtggcagcc
ttcctgggggccttggcctccctgggcaacctgaacattccctacaaaatagaggccgtc
aagagtgaaacggcggagcccgcgaggaactcccagctgtatcctatgtatgtggtgttg
gctgcactggtcttgctcgctttcattggactgggagtgctggtgtcccgcaagcggcgc
agggagcatggccagctctggttcccagagggcttcaaagtgacggagtcgagcaagaag
aagcgccgagagccgcttggggaagattctgttggactgaaacccctcaaaaatgcctct
gacggcacgctgatggacgacaaccaaaatgagtggggtgacgaggagaccctggacacc
aagaagttcaggttcgaggagcaagcgatgctgcctgatacagatgaccagacagaccac
aggcagtggactcagcagcacctggatgctgccgacctccgcatctcctccatggcccca
accccaccgcagggcgagatcgatgcagactgcatggatgtcaacgtgcgaggtccagat
ggtttcacgcccctcatgatcgcctcgtgcagcggaggagggctggagactggtaacagc
gaggaggaggacgatgctcctgcagtcatctcagatttcatctaccagggtgccagtttg
cacaaccagaccgaccgcactggcgagaccgcgctgcacctggctgcccgctactcgcgc
tccgacgctgccaaacgcctgctggaggccagtgctgatgcaaacattcaggataacatg
ggcaggacccctctgcacgccgccgtctctgccgatgcccaaggagtcttccagatcctg
ataaggaacagggcgactgatctcgatgcccgaatgcacgacgggacgaccccactgatc
cttgctgctcgcttggctgtggaggggatgctggaggacctcatcaactgccatgcagat
gtcaacgctgtggatgatctgggcaagtcagcactgcactgggcagctgctgtgaacaat
gttgaagccgcagtcgtcctcttgaagaacggtgccaataaggatatgcagaacaataag
gaggagaccccgctgttcctcgccgccagagaagggagctacgaaacagccaaggtcctg
ctggaccactttgcgaaccgcgacatcacggaccacatggaccggctgccgcgggacatc
gcgcaggagcgcatgcaccacgacatcgtgcgcctgctggatgagtacaacctggtgcgg
agtcctccactgcacagcggcccgctcggggcccccacgttgtcccccccgctctgctcc
cccagcagttacatcggcaacctgaagccggccgtgcagggcaagaaagccagaaagccg
agcaccaagggcctgagctgcaacggcaaggattccaaagacctgaaagcccggaggaaa
aaatcacaagatggaaaaggctgtctgctcgacaactccagcgtgctgtccccagtggac
tccctggagtcaccccatgggtacctgtccgacgtcgcctcccctccgctgatgacgtct
ccgttccagcagtccccttccatgccgctgaaccacctgcctggcatgcccgacgcccac
atgagcatcaaccacctcaacatggcagggaagcaggagatgaccctgggcggctctggc
aggatggccttcgaggcggtgccgccgcgcctctcgcacctccccgtctccagccccagc
acggccatgagcaacgccccgatgagtttctctgtcggtggagccgccggcctgagcggg
cagtgcgactggctgagccggctgcagagcggcatggtgcagaaccagtacagcgccatg
cggggcggcatgcagccgggcacgcaccagcaggcgcagaacctgcagcacggcatgatg
agctccctgcacaacgggctgcccagcaccagcctgtcgcagatgatgagctaccaggcc
atgcccagcacccggctggcctcccagccccacctgctgcagaaccagcagatgcagcag
atgcagcagcccggcatgcagcaggccagcatgcagccgcagcccggcatgcagcagccc
cagcagcagccccagcagcagcctcagccgcagcagcaccacaaccccggctccaacgcc
agcggccacatgggccaaaatttcctcggtactgagctgagccagcccgacatgcagccg
gtgagcagcagcgccatggcggtgcacaccatcctgccccaagattcacagctgcttccc
acctctctgccgtcctccctcgcgcagcccatgaccaccacgcagttcctgaccccccct
tcccagcacagctattcctccccgttggacaacacccccagccaccagctccaggtgccc
gaccaccccttcctcactccctctcctgagtctccagaccagtggtcgagctcctcgccc
cactccaacgtgtccgactggtccgagggcatctccagcccccccaccagcatgcagtca
cagatgggacacatccccgaggccttcaagtga
DBGET
integrated database retrieval system
