Lagopus muta (rock ptarmigan): 125702798
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Entry
125702798 CDS
T09141
Symbol
NUP88
Name
(RefSeq) nuclear pore complex protein Nup88
KO
K14318
nuclear pore complex protein Nup88
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125702798 (NUP88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125702798 (NUP88)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125702798 (NUP88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
STX6_10_61_N
Sec10_HB
Citrate_synt
Motif
Other DBs
NCBI-GeneID:
125702798
NCBI-ProteinID:
XP_048822481
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Position
20:complement(6472540..6481579)
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AA seq
722 aa
AA seq
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MAAEWGPAERWRAALPQHAAFSRLRESGAATSAAPRSPLIRSLLLGLDGDLLLWDGERGA
LLDIDLRRLSGAEPELGRYQTLLCINPPLFEVYQTLLSPARHHVALIGTKGLSAVELPKR
WGKNSEFEGGKAVVNCSTIPVAERFFTSSTSLTLKHAAWYPCETLEPHIVLLTSDNTIRI
YSLKVPQTPIKVIALSDAEEETLIINKGRAYTASLGETAVAFDFGPLVPVPVSILGQRGS
EEVLAFPLYILYENGETFLTYINLLQSAGNLGKLLGPLPMHPAAEDNYGYDACAVLCLPC
IPNILVIATESGMLYHCVVLDAEEDEEQSEKLWDPRSDLVPSLYVFECVELELALKLASG
DEEEPLDSDFSCPIKLHRDPKCPTRYHCTHEAGVHSVGLTWISKLQKFLDSDEEDKDSLQ
ELRAEQKCFVEHILCTKPLPCRQSAPVRGFWIVSDVLGPTMICITNTYECITRPLLTAVH
PASPSLLCTKEDKDDATSPLRVLAESQHSFEKHIQSILRRNSANPLLLKSADKDAAPPPE
ECLQLLSRATQVFREEYILKQDLAKEEIQQRVKLLWGQKKKQLEDLNYCREEKKSLREMA
ERLADKYEEAKEKQEDIMNRMKKVLRSFQSQLPVISDSERDMKKELQTIHDQLQHLSNAI
RQVKMKKEYQQKKMEKGISPRKPSITLSAYQSKCIQTVLKEEGERIREMVKQINDIRGHV
NF
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgagtggggcccggcggagcggtggcgggcggccctgccgcagcacgctgct
ttcagccgcctccgcgagagcggcgccgcgacctccgccgccccgcgctccccgctgatc
cgcagcctgctgctgggcctggacggagacctgctgctatgggacggcgagcgcggcgcg
ctgctcgacatcgacctccgccgtctgagcggcgccgagccggagttgggccgttaccag
acgctgctgtgcatcaatccgccgctgttcgaggtgtatcagacgctgctcagccccgcg
cggcaccatgtggcgctgatcggcaccaaagggctctcggccgtggagctgcccaaacgc
tggggcaaaaactccgagttcgagggcgggaaggccgtggtgaactgcagcaccatcccg
gtcgcagaacggttcttcaccagttccacgtccctcaccctgaagcacgcggcctggtac
ccctgcgagaccctggagccccacatcgtgctgctgacttcggataacaccatcaggatc
tatagcctgaaggtgccccagacgcccatcaaggtgattgcgctctcagatgctgaggag
gagaccctgatcatcaacaaagggagagcctacacagcgtcgctgggagagaccgcagtg
gcgtttgacttcggcccgctggtgcccgtcccagtgagcattcttgggcagcgaggcagt
gaagaagtgctggcttttccactttacattttatatgaaaatggagagacattcctcact
tatatcaacctgctgcagagtgctggaaatcttggcaagctgctcggccctttgcccatg
caccctgctgcagaagacaactatggctacgatgcctgtgctgtcctgtgcctgccttgt
attccaaatatcctggtgattgccactgaatcgggcatgctttatcactgtgtggtgctg
gatgcagaagaggatgaggagcagtcagaaaaattgtgggacccgagatctgatcttgtt
ccttccctgtacgtgtttgaatgtgttgagctggaacttgcactgaaattggcatcagga
gatgaggaagagcctttggactctgatttctcttgcccaatcaaactgcatcgagatccc
aaatgccctaccagataccactgcacacatgaagcgggtgtgcacagcgtggggttgacg
tggatcagcaaactgcagaagttccttgactcagatgaagaagacaaagatagtttacaa
gagctgcgtgcagagcagaagtgctttgtcgagcatattctgtgtacaaagccattgcca
tgcaggcaatctgctccagttagaggattttggatagtatctgatgtgctgggacccaca
atgatctgcatcacaaatacctatgagtgcatcacaaggccactcctaactgcagtccat
cctgcatctccttctctactgtgtaccaaagaagacaaagatgatgcgacttctcctctc
cgtgtcctggctgaatcacagcattcatttgagaagcacatccaaagcatcctgcggcgt
aattctgccaaccccttgctcctaaaatctgctgataaagatgctgctcctccccctgaa
gaatgccttcagcttcttagccgagccacgcaagtgttcagggaggaatatatactgaaa
caggatctggcaaaagaggaaattcagcaaagagtgaagttgctgtggggacagaagaag
aaacaactggaagaccttaattactgtcgagaggaaaagaaaagtttgcgagaaatggct
gaacggctggctgacaagtatgaggaagccaaagagaagcaagaagatattatgaatagg
atgaagaaagtgcttcgtagtttccaatctcagcttcctgttatatcagacagtgaaaga
gatatgaagaaagaactgcagacaatccatgaccagctgcagcacttgagcaatgcaatc
agacaggttaaaatgaagaaggaataccagcagaaaaagatggaaaaaggcatcagccca
cgaaaacccagcatcaccctcagtgcctaccagagcaagtgcatccaaaccgttctgaaa
gaagagggagaacgcataagggaaatggtaaagcagatcaatgacatcagaggccacgtg
aacttctaa
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