Lagopus muta (rock ptarmigan): 125702846
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Entry
125702846 CDS
T09141
Symbol
SUPT6H
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125702846 (SUPT6H)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125702846 (SUPT6H)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
125702846 (SUPT6H)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
125702846 (SUPT6H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_3
S1
HHH_9
S1_RRP5
SH2
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
125702846
NCBI-ProteinID:
XP_048822583
LinkDB
All DBs
Position
20:complement(4127413..4153537)
Genome browser
AA seq
1726 aa
AA seq
DB search
MSDFVESEAEESEEEYNQDGEVVPRVTKKFVEEDEDDEEEEEENLDDQDEQGNLKGFIND
DDDEEEEEEEEASDSGDSEDDVGHKKRKRTFDDRLEDDDFDLIEENLGVKVKRQKFRRVR
KMSDDEDDEEEDYGKEEHEKEAIAEEIFQDGEGEEGGEAVEAPVAPPEEEEEEEEDESDI
DDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEEMEEEYE
YEDEEAEGETRVRPKKTAKKRVSRRSIFEMYEPSELESSHLTDQDNEIRMTDMPERFQLR
SIPVKSAEDDELEEEADWIYRNAFATPTISLQESSDYLDRGQASSSFSRKGPSTIQKIKE
ALNFMRNQHFEVPFIAFYRKEYVEPELHINDLWSVWQWDEKWTQLKIRKQNLTRLFEKMQ
AYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQNA
AKAARKKQKRIREDGEEEEGEGEDAEDDEQKGPELKQASRRDMYTICQTAGLDGLAKKFG
LTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPSPEAVLEGARYMVALQIAREP
LVRQVLRQTFQERAKINISPTKKGKKDIDEAHYAYSFKYLKNKPVKELRDDQFLKMSLAE
EEALLTIDISIDMKGVEGYGSDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERSLNQF
LYVQMAKELKNKLLVEAKEYVLKACSRKLYNWLKVASYRPDQQVEEDDDFMDENQGKGIR
VLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRNAWREEEREKKAQDIETLKKFL
LNKKPHVVTIAGENRDAQMLMEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSE
NEFRDYPPLLRQAVSLARRIQDPLVEFAQVCSSDEDILCLKLHPLQEHVVKEDLLNALYC
EFINRVNEVGVDVNRAIAHPHSQALLQYVCGLGPRKGTHLLKILKQNNTRLENRTQLVTM
CHMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESA
EDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTP
YRSPNTEEVFNMLTKETPETFYIGKMIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPF
CQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVAGFIPTKFLSDKVVKRPEERVKVG
MTVHCRIMKIDIEKFSADLTCRTSDLMDKNNEWKLPKDTYYDFDTEAADHKQEEDMKRKQ
QRTTYIKRVIAHPSFHNISFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVNDGIYQH
VDVREEGKENAFSLGSTLWINTEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCNGGDK
KKLEELLIKTKKEKPTFIPYFISACKDLPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQV
FPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMT
SQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFTTPAQQPVATPLMTPS
YSYTTPSQPITTPQYQLQANTTPQSTQSQAQSQPSSSSRQRQQPKTNSHAAIDWGKMAEQ
WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactttgtagaaagtgaagcagaggagtcagaggaggagtacaaccaggatgga
gaggttgttcccagggtaaccaagaaatttgtagaagaagatgaggatgatgaggaagag
gaggaggagaatcttgacgatcaagatgagcaggggaacctgaaaggattcattaacgac
gatgatgatgaggaagaggaagaggaggaagaagccagtgactctggggactctgaggat
gatgttggccataaaaagagaaagcgcacttttgatgaccgcctggaggacgatgatttt
gacctcattgaagagaacttgggtgttaaagtcaaaaggcaaaaattcaggcgtgtgcgg
aaaatgtctgatgatgaggatgatgaagaggaggactatggcaaggaagaacatgagaag
gaagccattgctgaagaaatctttcaggatggtgaaggcgaggagggaggggaagctgtt
gaagctcctgttgcaccaccagaagaggaagaggaggaggaagaagatgaatctgacatt
gatgacttcattgtggatgacgatggacaacctctgaagaagccaaaatggaggaagaag
ctcccaggatacactgatgctgctttgcaggaagcccaggaaatctttggtgtggacttt
gactacgatgagtttgagaagtacaatgagtatgatgaggagatggaggaagaatatgaa
tatgaggatgaagaagctgaaggagaaacccgtgtccgacccaagaagactgccaagaaa
cgtgtcagtcggcgtagcatctttgagatgtatgagcccagtgagctggagagcagtcac
ctaacagatcaggacaatgagatccgaatgacagacatgcctgagagattccagttgaga
tccatccctgtaaaaagtgctgaagatgatgagctggaggaagaagctgactggatttac
agaaatgcatttgcaacacccaccatttccttgcaggaaagttctgactaccttgatcgt
gggcaagccagcagcagcttcagccgcaagggacccagcaccatccagaagattaaagaa
gccctgaattttatgagaaatcaacattttgaggtgccattcatcgccttctacagaaag
gagtacgtggaaccagagctgcacatcaatgacctctggagtgtgtggcagtgggatgag
aagtggacccagctgaagatccgcaagcaaaacctgacacgtctgtttgagaagatgcag
gcctaccagtatgagcagatctctgctgacccagacaagcctttggctgatggaataagg
gctcttgatactactgatatggagaggctgaaggatgtgcagtccatggatgagctgaaa
gatgtgtataatcacttcctgctgtactatgggcgagacatccccaagatgcagaatgct
gcaaaggctgctcgaaagaagcaaaagcgtatccgagaagatggtgaagaggaggaaggt
gaaggggaggatgcagaagatgatgagcagaaaggacctgagctgaagcaggcttcccgt
cgggatatgtacaccatctgccaaacagctgggctggatggcctggctaaaaagtttggt
ctgacacctgagcagtttggagagaatctccgagacagttaccaacgtcacgagacagag
cagttccctgcagagcccctggagctggccaaggactacgtgtgtagtcaattcccaagc
ccagaagctgttctggaaggagcacggtacatggtagcattgcagatagccagggagcct
ttggtcaggcaggttctgagacagactttccaagaaagagctaaaatcaacatttcacca
accaaaaaggggaagaaggatattgatgaagcccactatgcctattccttcaaatacttg
aagaacaagcctgtgaaggagctgcgagacgaccagttcctgaaaatgagcctggcagaa
gaggaggcactgctgactatagacatcagcatagacatgaaaggagtggagggttatggt
agtgaccagacatactttgaggaaatcaaacagttctattatcgggatgagttcagccac
caggtgcaggaatggaatcggcagcgtaccatggccattgagcgatccctcaaccagttc
ctctatgtgcagatggctaaagagctgaagaacaagctgttggtggaggccaaggagtat
gtcctcaaggcttgcagccgcaagctgtacaactggctgaaagtagcttcataccgtcct
gatcaacaagtggaggaagatgatgatttcatggatgaaaaccaagggaaaggaattcgg
gtgctaggcattgcattttcctcagccagggaccaccctgtgttttgtgccctcgtcaat
ggagagggagaggttacagacttcctccgactgccacatttcacgaagagaaggaatgct
tggcgtgaggaagagagggaaaagaaggcacaggatattgaaaccttgaaaaaattcctt
ttgaacaagaagcctcacgtggtcacaattgcaggcgagaacagggatgctcagatgctg
atggaggatgtaaagaggattgttcatgaactggatcaggggcagcagctgtcctctatt
ggagtagagctggtagataatgaactggccatcctctacatgaacagcaagaaatctgag
aatgagtttcgggattacccacctttgttacgccaagcagtttccctcgctcgtcgcatt
caggaccctctcgtagagtttgctcaggtctgcagctctgatgaggacattctgtgcctg
aaactccatcctctgcaggagcatgtggtgaaggaggacctgctgaacgccctctactgt
gaattcataaaccgtgtgaacgaggtgggagtggatgtcaatcgggcaattgctcaccct
cacagccaggctttgctgcagtatgtgtgtggcctgggaccacgcaaaggcactcatctg
ctaaagatcttaaaacaaaacaacacacgtctggagaacaggacccagctggttacgatg
tgtcacatgggacccaaggtgtttatcaactgtgcaggcttcatcaaaattgacacagca
tcgctgggcgatagtactgattcctacattgaagtcctggatggctccagggtccatccc
gaaacctatgagtgggcaagaaaaatggcagtagatgccttagaatatgatgagtcagct
gaggatgcaaatcctgcaggagctttagaggagatcttggaaaaccctgaacgactgaag
gacctggatctcgatgcctttgctgaagagctggaaagacagggctatggtgacaagcac
ataactttatatgacattcgagctgaactaagctgcaggtacaaggacctcaggacccca
taccgttctccaaatacagaagaggtcttcaatatgctgaccaaagaaactccagagact
ttttatattggtaaaatgatcatctgcaacgtgactgggatagcacacaggcggccacaa
ggagaaagctatgaccaggcaatacggaacgacgaaactggtctttggcagtgtcctttc
tgtcagcaggataacttcccagagctcagtgaggtttggaatcactttgacagtgggtcc
tgcccaggtcaggccattggagtgaagacacgtctggataatggtgttgctggcttcatc
ccaacaaaatttctaagtgataaggtggtcaaacggcctgaagaaagggtgaaggtggga
atgacagttcactgcaggattatgaagatcgacatcgagaagttcagtgcagatctgacc
tgcaggacctcagacctgatggataagaacaacgagtggaaactgcctaaagacacctac
tatgactttgatactgaggcagcagatcacaaacaggaggaagacatgaagagaaagcag
cagcggacaacgtacatcaagagagtaattgctcacccatcattccacaacatcagcttc
aagcaagctgagaagatgatggagaccatggaccaaggggatgtgattattcggccaagc
agcaaaggggagaaccacctcactgtcacctggaaggtgaatgatggcatttaccagcac
gtggatgttcgagaagagggcaaggagaacgccttcagcctgggctctacgctgtggatt
aacacagaggagtttgaagacttggatgaaattgttgctcgctatgtccagccaatggct
tcttttgccagagacctgttgaatcacaaatactaccaggattgcaacggtggagacaag
aagaagctggaagagctgctgataaagaccaagaaagagaagccaacgtttattccctac
tttattagtgcttgtaaagatctacctggcaaattccttttgggttatcagcctcgaggc
aaaccaaggatagagtatgtgacagtgacaccagaaggattccgctaccggggccaggtc
ttccctacagtgaatggactgttccgatggtttaaggatcattatcaggaccctgttcca
ggtattactcccagcagtagcagtcggaccaggactccagcctccattaatgctactcca
gctaacattaacctggcagacctgacccgtgcagtgaacgctctaccccagaacatgact
tcccagatgttcagtgccattgctgctgtgacagggcaggggcagaacccaaatgccacc
cctgcacagtgggcatccagtcagtatggctacggaggcagtggaggtggcagcagcgcg
taccacgtcttcacaactccagcgcagcaaccggtggccacccctctgatgacccccagt
tactcctacaccacccccagccagccgatcacaacgccccagtaccagctccaggccaac
accacaccgcagtccacacagtcccaggcacagtcgcagccctcgtccagttccagacag
aggcagcagccaaagaccaacagtcacgctgccatcgactgggggaagatggccgagcag
tggctccaggagaaggaggctgagcggaggaaacagaagcagaggttgactcctcgcccg
tctcccagccccatgattgagagcacacccatgtccatcgccggggacgccacgccgctg
ctggatgagatggaccgatag
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