Lagopus muta (rock ptarmigan): 125702862
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Entry
125702862 CDS
T09141
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125702862 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125702862 (LIG3)
Enzymes [BR:
lmut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125702862 (LIG3)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
125702862 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
125702862
NCBI-ProteinID:
XP_048822618
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All DBs
Position
20:5380517..5395477
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AA seq
985 aa
AA seq
DB search
MPAGSAALTRAARALGLGCPRALLSWPRPWSHCAALPGSRCRPSVSAVARCVRVKPGSVA
ASLLVPPPVYAWPCRACTAAGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPN
PFTESGGDMKEWYHVKCMFEKLEKARATTKKIEDITDLEGWEELQDGEKELITNLISEAT
SKAASTPKKKATVQAKLTATGQISSPQKDPLANINPKKFSGFTAKPKNSEEVSANSSHNS
SLSAKNCDPKHKDCLLREFRKLCAMVADKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTI
KLLLPGIIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFFEQSKSCPPA
AKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQDITRRCTGNDLKCIIRLIKHDLKMNAGAK
HVLDALDPNAYEAFKASRNLQDVVERVLRNQQDAEKTPGVKRALSVQASLMTPVQPMLAE
ACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQ
AFPGGHSMILDSEVLLIDNKTGKPLPFGSLGVHKKAAFQDANVCLFVFDCIYFNDVSLMD
RPLRERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVICEGLEGLVLKDIKGNYE
PGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSKGGMMSIFLMGCYDPKSEKWCTVT
KCAGGHDDATLARLQTELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITGA
EFSKAEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKAEFSVVAGEEEE
STAGSSGENEGNSRSSTPHKMTKTPPNKSPAKAKKPEGTKAVAESPQKPEEKRGEKRKAS
EIEDNGKKLLLDIFTGVKLYLSPSVKDFNKLRRYFIAYDGDLVSEYDTASATHVIGDMEE
NHGAKQVSPKWIWECIRKRRLVAPC
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgggcagcgcggcgctcactcgggctgctcgggcgctcgggctcggctgcccc
agggcgctgctctcctggccgaggccctggtcgcactgcgctgctctgcccggctcccgc
tgccggccgtcggtgagtgcggttgcccgctgtgtgcgcgtgaagccgggcagcgtcgcc
gcgagcctcctcgtccctccacccgtgtacgcgtggccgtgccgggcctgcacggcggcg
ggggacatggccgaacagaggtactgcgtggattacgccaaacgcggcacggccggctgc
aagaagtgcaaggagaagatcgtgaaggggatggtgcgcatcgggaagatcgttcccaac
cctttcacggagtctggcggggatatgaaggaatggtaccacgtcaagtgcatgtttgag
aagctggagaaggcccgggcaaccaccaagaaaattgaagacatcacggatttggaaggg
tgggaagagctgcaggatggggagaaagaactgatcaccaacctcatctcagaagctacg
tccaaggctgcaagtacaccgaagaaaaaagcaacagttcaggctaagctcactgccact
ggacaaataagcagtccccagaaagatccattggctaatatcaatccaaagaagttctct
ggcttcacagccaagcccaagaattctgaagaggtgtctgcaaactcttcccacaactcc
agcctgtctgcaaagaactgtgatccgaagcacaaagactgcttgctgcgagagttcagg
aagctctgtgccatggttgctgacaagcctagttacaacgtgaaaacacagatcatccag
gacttcctgaagaagggaagtggaggagatggttttcatggtgatgtatacctgaccatt
aagctactcttaccaggcatcattaaaattgtttacaacttgaatgataagcagattgtg
aagctgttcagtagaatttttaactgcagccaagaagaaatggtccgggacctggaacag
ggagacgtttctgagacaattcgcctcttctttgagcagagcaaatcttgtcctccagca
gccaaaagcctcctgaccatccaggaggtcgatgagtttctcatccagctgtccaagctt
actaaggaagatgaccagcaaagcgtgctgcaagatatcactcgcagatgtacaggcaac
gacctgaaatgcatcatcaggctgattaagcatgacttgaaaatgaacgccggcgcaaag
catgtgttggatgctctggatccaaatgcttacgaggcgttcaaagcatcgcgcaacctc
caggacgtggtggagcgagtcctgaggaaccagcaggacgctgagaagacgccaggtgtg
aagcgagcgctcagcgtgcaggcctctctgatgaccccagttcagcccatgctggctgaa
gcctgcaagtcaatagagtatgccatgaagaagtgccccaatggcatgtatgcagagatt
aaatacgatggtgagagggtgcaggtccataaaaacggggatcacttcagctacttcagc
cggagcctcaaacctgtcctgcctcacaaagtagcccactttaaggacttcatcccccag
gctttccctggtgggcacagtatgatcctggattcagaagttcttctaattgataataaa
actggcaagccacttccttttggatctcttggtgtacataagaaagctgctttccaagat
gccaacgtttgcttgtttgtgtttgactgcatctatttcaacgacgtcagcctgatggac
aggcctctgcgtgagcgccgtaaattcctgcatgacaacatggtcgaaatccccaaccgg
atcctgttctcagagatgaagcacgtcacaaaagcttcagatctggcagatatgatcacc
cgagtcatctgtgagggattggaaggactggtgttgaaagacataaagggtaattatgaa
ccaggaaagcggcactggctgaaagtgaagaaggattacctaaatgagggtgcaatggct
gacacagcagacttggtggtgctgggagctttctatgggaaaggcagtaaaggtgggatg
atgtccatcttcctcatgggctgctatgaccccaagagtgagaagtggtgcactgtgacc
aagtgtgctggtggccacgatgatgccaccttggcccgtctgcaaacagagctggatatg
gtgaagatcagcaaggatcctagtaaaattccaagctggctgaaaataaacaaaatctac
tacccagacttcattgtcccagatccaaagaaagctccagtgtgggagattacaggggct
gagttctccaaagctgaagcccacactgcagatgggatctccattcgcttccctcgctgc
actcgcattcgagatgacaaagactggaagtcagccaccaacctcccgcagctgaaggag
ctgtaccaactctccaaagaaaaggctgagttcagtgttgttgctggggaggaggaggag
tccacagctggcagcagtggagagaatgagggaaattccaggtcttccacaccacacaag
atgactaaaactccccctaacaagtcccctgcaaaagccaagaaaccagaaggcaccaaa
gcagtcgctgaatcccctcagaagccagaggagaaacgaggagagaagcgaaaagcatct
gagatagaagacaatggaaagaagctgctgctggatatattcactggtgtgaagctctac
ttgtcaccctctgtgaaggacttcaacaaactccggcgctacttcatcgcatacgatggc
gacctcgtgtcagagtatgacacagcctcagcaacacatgtgattggggacatggaggag
aaccatggtgctaagcaggtgtctcccaaatggatctgggaatgcatccggaaacggaga
ctggtggccccctgctag
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