Lagopus muta (rock ptarmigan): 125702887
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Entry
125702887 CDS
T09141
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125702887 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lmut03041
]
125702887 (PRPF8)
Spliceosome [BR:
lmut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125702887 (PRPF8)
Complex C
U5 SnRNP specific factors
125702887 (PRPF8)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
125702887
NCBI-ProteinID:
XP_048822676
LinkDB
All DBs
Position
20:4559224..4577235
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AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPTPMAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcttcccgtaccgcggcggctgcgcgccggtgccgaccccgatggcaccg
ctgcccgactacatgtctgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggaaaagaggaaattcggcttcgtggacgcgcagaaggaggac
atgcctcccgaacacgtccggaaaatcatccgcgaccacggcgacatgaccaacaggaag
ttccgccacgacaagcgcgtctatctgggtgctctgaagtacatgcctcatgctgttctg
aagctcttggagaacatgcctatgccctgggagcaaatcagagatgttccagtcctgtat
cacatcacaggagccatctcttttgtgaatgagattccgtgggttatagagccagtgtac
attgcacagtgggggtccatgtggattatgatgaggagagaaaaaagggacagacgtcac
ttcaagagaatgagatttcccccatttgatgatgaagaacctccactggattatgctgat
aacatcctagatgtggagcccctggaagcaattcagcttgaactggatccagaggaagat
gctccagtactggactggttctatgaccaccagccactgaaagacaatagaaagtatgtg
aatggttctacctaccagcgctggcagttcactctgcccatgatgtccacgctgtatcgg
ctggccaatcagctgctcactgaccttgtggatgacaactatttctatttgtttgacctg
aaagcatttttcacttccaaggcgctgaacatggctattcctggaggtcccaagtttgag
cctcttgttagagacatcaatctgcaggatgaggactggaatgagtttaacgacatcaac
aaaattatcatcaggcagccaatcaggacagagtacaaaattgctttcccatacctgtac
aataaccttccccaccacgtccacctgacctggtatcatactccaaacgttgttttcatt
aaaacagaagatcctgatctcccagcattttacttcgacccgctgatcaaccccatttca
cacaggcattctgttaagagtcaggagccgctgcctgatgatgatgaagagtttgagtta
ccagagtttgtggaacctttcttgaaggataccccgctctacacagacaacacagccaat
ggcattgccctgctgtgggccccacggccattcaatctgaggtctgggaggactcggaga
gctcttgacatcccgctggtcaagaactggtatcgtgagcactgcccagctggccagcca
gtgaaagtacgagtctcctatcagaagctgctgaaatactacgttttaaatgccctcaag
cacagaccccctaaggcccagaagaagaggtacctattccgctccttcaaggctacaaag
tttttccagtcaacaaagctggactgggtggaagtaggcctgcaggtgtgtcgccagggc
tacaatatgctgaacttgctgatccacagaaagaacctgaactaccttcacttggattac
aactttaacctgaagccagtgaagaccctcaccactaaggaaaggaaaaagtcccgtttt
ggtaatgctttccatctgtgccgagaggttctgcggctgaccaaattggtggtggacagc
cacgtccagtacaggcttggaaatgtagatgcatttcagttggcagatggcttgcagtac
atctttgcccatgtcggtcagctgacagggatgtacagatacaagtacaaactaatgagg
cagattcgtatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtccaggctgtggcttctgggctccaggctggagagtgtggctgtttttc
atgaggggcatcacgccactgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactcaaagggtgtcgcaaagactgtcacaaagcagcgtgtggagtctcac
tttgacctggagctgagggcagctgttatgcatgacattctggacatgatgccagaaggg
atcaaacagaacaaagccagaaccatcctgcagcatctgagtgaggcttggcggtgctgg
aaggccaatatcccctggaaagttcccgggctgccaactccaattgagaacatgatcctg
aggtatgtgaaggcaaaagctgactggtggacaaacacagctcactacaacagagagcgt
atccgtcggggtgccactgtggacaagactgtctgtaagaagaatctgggccggctgacc
agactctacttaaaagctgagcaggagcggcagcataattacctgaaggatgggccttac
atcaccgcagaggaggccgttgctgtgtacacaaccacagtgcactggctggaaagcagg
aggttctcacccattccattccccccgttgtcctacaagcacgataccaagttgctcata
ttggccctggaaaggctgaaggaagcttacagtgtgaaatctcgtctgaatcagtcacag
agggaggagctgggcttgattgaacaggcttatgacaatcctcacgaagctctgtccaga
atcaaacgtcaccttttaactcagagagccttcaaggaggttggcattgagttcatggat
ctgtacagccaccttgttcctgtttacgatgttgagcccttggagaaaatcacagatgct
tatctggatcagtacttgtggtatgaagctgataaaagaagactcttccctccttggatc
aagcctgctgacactgaacctcctccgctgttagtgtacaagtggtgccaaggcattaat
aatctgcaagatgtttgggaaacaagtgaaggtgaatgcaatgtgatgctggaatctcga
tttgagaagatgtatgagaagattgacctgaccttactcaacaggctgctgcgtcttatt
gttgatcacaacattgctgactacatgacagcaaaaaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcctacgggattattcgtggattgcagtttgcttccttcatt
gtccagtattatgggcttgtgatggacctgctggtgctgggtctgcaccgtgccagtgaa
atggctggacctccccagatgcccaatgacttcctcagcttccaagacattgcaactgag
gtggcccatcccattcgccttttctgcagatacatcgaccgcattcacatcttcttcagg
tttacagcagatgaggcaagggacttgattcaacggtacctgacagagcatccggatccc
aacaacgagaacattgtaggctacaacaataagaagtgctggcctcgggatgctcggatg
cgcctcatgaagcacgatgtcaaccttggccgtgctgtgttctgggatatcaagaaccgc
ctgcctcgatccgtcaccacggtgcagtgggagaacagcttcgtgtctgtttacagcaag
gataaccccaacttgctgttcaacatgtgtggttttgagtgtcgcattttgcccaagtgt
cgcaccagctatgaggagttcacccacaaggatggtgtctggaacctgcagaatgaggtc
accaaggagcgcacagctcagtgcttcctgcgcgttgatgatgagtctatgcagagattt
cacaacagagtgaggcagatcctcatggcatctggctctacaactttcaccaagattgtc
aataagtggaatacagctctgattggcctgatgacatatttccgggaagctgttgtaaat
actcaggagctgcttgacttgctggtgaagtgtgagaataaaatccagactcgaatcaaa
attggtctgaattccaaaatgcctagccgttttccacctgtggtgttctacacccctaaa
gagctgggaggtctgggcatgctctctatgggacatgttctcatcccacagtctgacctg
aggtggtccaagcagaccgatgttggcattactcattttcgctcagggatgagtcacgag
gaggaccagctcatcccaaatttgtatcgttacatccagccgtgggagagcgagttcatt
gactcacagagagtgtgggcagaatatgctctcaagagacaggaggccatagcccagaac
aggcggctgacactggaagatctggaggactcttgggacagaggaattcctcgtattaat
acccttttccagaaggaccggcataccctagcttatgataaaggatggagagtcaggact
gacttcaagcaataccaggtcctgaaacagaacccgttctggtggacacatcaacgccac
gatgggaagctgtggaacctgaacaactaccgcactgatatgatccaggcactgggcgga
gtggaggggatcctggagcacactctgttcaagggcacttacttccccacatgggagggt
ctcttctgggagaaggccagtggatttgaggagtccatgaagtggaagaagttgacaaat
gcccagaggtcgggtttgaatcagattccaaacagaagatttactctgtggtggtctcct
accattaacagagccaatgtctatgttggctttcaggtgcagctggatttgacaggtata
ttcatgcatggcaagatccccacgctgaagatttctctcattcagattttccgagctcac
ttgtggcagaagatccacgagagcattgtgatggatttgtgtcaggtgtttgatcaggag
ctggatgctctagagattgagacagtgcagaaggagacaatccatcccagaaaatcatac
aagatgaattcctcatgtgcagatatcctcctctttgcttcctacaagtggaatgtgtca
cgtccatcattgcttgcggattctaaagatgtgatggacagcaccaccactcagaagtac
tggatagatatccagctgcgctggggagattatgattcccatgatattgagcgctatgca
agagccaagttcctggactacactacagacaacatgagtatctatccatcccccactggc
gtgctcattgccattgatctggcctataatttacacagcgcatatgggaactggttccct
ggcagtaaacctctgatccagcaggctatggctaaaattatgaaagcaaatcctgccctg
tatgtgctgagagaacgaatccgcaaaggcttgcagctgtactcatctgagcccacagaa
ccctacctttcctctcagaactatggggagctcttctccaaccagatcatctggtttgtg
gacgacaccaatgtgtacagagtgaccattcacaagacttttgaagggaatttgaccaca
aaacctatcaatggagccattttcatcttcaaccctaggaccggacagctcttcctgaag
atcatccacacatctgtgtgggcaggacagaagcgtctcgggcagctggccaagtggaag
actgctgaagaggtggctgccttgatccgctcgcttcctgtggaggagcagcctaagcag
atcatagtgactcgaaagggcatgctggacccacttgaggtgcacctgctggatttcccc
aatattgtgatcaaaggctccgagttgcagctgcctttccaggcctgcctgaaagtggag
aagtttggtgatctcatcctgaaggctactgaacctcagatggttctcttcaatctctac
gatgactggctgaaaaccatctcttcctacacggcattctcacgtctgattctcattctc
cgagcactgcatgtgaataatgacagagccaaagttattctgaaaccagacaagacaacc
ataacagagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaagatctgatccttgctgactatggcaagaagaacaatgtgaacgttgca
tccctaacacaatcagagatccgagacatcatcctgggcatggagatctctgccccctct
cagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcgcagctgaca
gccacacagacccgcactgttaacaaacatggggatgaaatcatcacctccacaaccagc
aactacgaaacccagactttctcctccaagactgagtggcgagtcagagcgatttccgct
gccaatctccacctgagaacaaaccacatttatgtttcatcagatgacataaaggaaaca
ggctatacgtacattcttcccaagaatgtgttgaagaaattcatctgcatctcagatctg
cgagcccagattgcaggttacctttatggagtgagtcctcctgataatccccaagtgaag
gagatccggtgcattgtgatggtaccccagtggggaacacaccagactgtgcatctccca
gggcagctgcctcagcacgagtacctcaaggaaatggaacctctggggtggattcatacc
caacccaatgagtccccgcagctgtcgccgcaggatgtcaccacccatgccaaagtcatg
gctgacaacccctcctgggatggagagaaaactatcatcatcacctgcagttttacacca
ggttcctgcacactgacagcctacaaactgaccccaagtggctacgagtggggcaggcag
aacacagacaaagggaacaaccccaagggctacctgccatcccattatgagagggtgcag
atgctgctgtcagatcgattcctcggcttcttcatggttccagcacagggatcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccatcgtccttctcacttcctcaacttcgccctgctg
caggagggggaggtttactccgccgacagggaggacctctacgcctga
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integrated database retrieval system
