Lagopus muta (rock ptarmigan): 125703330
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Entry
125703330 CDS
T09141
Symbol
EXOSC10
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125703330 (EXOSC10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125703330 (EXOSC10)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
125703330 (EXOSC10)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
GATA_AreA
Motif
Other DBs
NCBI-GeneID:
125703330
NCBI-ProteinID:
XP_048823635
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Position
21:complement(4079054..4094596)
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AA seq
910 aa
AA seq
DB search
MAAAVGEGKGCAVAGSPEARGGRGGSGGLPAEQEREGNPAAAPVLPGFDDVDAFVKHALG
TMVATTKASSGLPQPGDEYDFYRSFPGFRAYCEAQGQRLLHCMSRVMQYHGCRSHMRDHS
KVTELEDKFDMLVDSNDVILERVGILLDEAAGVNKNQQPVLPAGLQMPQTIVSSWNRKAG
EYHKRTKSETFRLLHAKNITRPQLKFKEKIDNSNTPFVPKLFIKPNALKPLPEALTKSGR
ERKERPEDLDVPAALADFIHQQRTQQTEQDMFAHPYQYELEHFSPPDGVLKKPEPQMYRP
MKETPCHFITTLDELVELNEKLMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDT
LELRSDMSILNETFTDPAIVKVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGKHS
LDHLLKLYCSVDADKQYQLADWRIRPLPEEMMQYARDDTHYLLYIYDKMREALWERGNEQ
PAQLRVVWQRSRDICLKKYIKPLFSDESYLELYRRQKKHLNTQQLTAFRLLFAWRDKTAR
QEDESIGYVLPNHMLLKIAEELPKEPQGIIACCNPVPPLVRQQINELHLLVQQAREMPLL
KSEIALTVKKRTSLSNPERLENAFFGPHDSSRIPMDDFQNNSALESSSAPVLERDSLFSD
SERTMNIQGVQPESACLIATATVSIFSECDKDEGSEKVLTAAQKKAQRIMESFENPFRMY
LPSEQNPAYVSQSAKFDPSSKIYEISNRWKLMSKTQVQKESRDEAKKKAAQQSAARDQAQ
KEYKEATENIVSVRQQAMQEQANRKRERVMSETAPELPKPEKKRPKASQQPEELEAPKQF
TPFDYSKFNFKVFAGSSKSKQSAQFDPARQVHTGKKFAGANKLQQPAGNRSMSYLAGKAD
RGSKHHWPKR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccgtcggcgagggaaaaggctgcgcggtggcggggagtccagaggcccga
gggggcagaggggggtcagggggactgcccgcggagcaggaaagagaagggaaccccgcc
gcggcgccggtgctgcccggcttcgacgacgtcgatgccttcgtcaagcacgccctcggc
accatggtggccaccacgaaggcatccagcgggctcccgcagcccggcgatgagtacgac
ttctaccgcagcttccctgggttccgggcgtactgcgaggcgcagggccagcggctcctg
cactgcatgagcagggtgatgcagtaccacggctgccgcagccacatgagagatcacagc
aaagtcacagagctggaagataagtttgatatgctggttgactccaatgacgtcattctt
gaaagagtgggtattttactggatgaagcagcaggagtgaacaaaaaccagcagcccgtc
cttcctgctgggctgcagatgccacagacgatcgtctccagctggaaccgcaaggcagga
gaataccacaaaagaactaagtctgaaaccttccgactgcttcacgccaagaacatcact
cgcccacagcttaagtttaaagaaaagattgacaattccaacactccctttgtacctaaa
ctttttatcaagccaaatgctttgaaaccattgcctgaagccctcacaaaaagcggacgg
gaacgaaaggaacgccctgaagacttggatgtcccagctgctttggcagacttcatacac
cagcagaggacgcagcaaactgagcaagacatgtttgctcatccttaccagtatgaactg
gagcacttttctccaccagatggagttcttaagaagccagaaccccagatgtacagaccc
atgaaggaaacaccttgccattttatcactacgctggatgagctggttgaactgaacgag
aagcttatgaactgtaaagagtttgctctggacttagagcaccattcctacaggagcttc
ctgggcttgacgtgtctgatgcagatttccactcgaacagaagacttcattattgatacg
ctggagctgcgcagtgacatgagcatcctcaatgagaccttcacagacccagcaattgtg
aaggtcctgcacggtgctgattcagatgtggagtggctgcaaaaagactttggcctgtac
ttggtgaacatgtttgatactcaccaagctgctcgtcttctcaatcttggcaagcactct
ttggaccacttgctgaagctgtattgcagtgtggatgctgacaagcagtaccaactggct
gactggaggatacgccctttgccagaggaaatgatgcagtatgcccgtgatgacactcac
tacttgctctacatttacgataagatgagggaggcactatgggagagaggcaacgagcag
cctgctcagctgagggttgtttggcagcgcagcagggacatctgcctgaagaaatacatc
aagcccctcttttcagatgagtcctaccttgagctctacaggaggcagaagaaacacctc
aacacacagcagctgacagcatttaggttgctgtttgcgtggagagacaagacagcgcgt
caggaagatgagagtataggctacgtgttaccaaaccacatgttattgaagatagcagag
gagctgcccaaagagccccagggtatcattgcttgctgcaatccagtcccacctctggtt
cgccagcagattaatgagttgcatcttctcgttcagcaggcccgagagatgcctcttctc
aagtcggagattgctttgacagtcaagaaaaggacatccctctccaaccctgagaggctg
gagaatgccttctttggaccacatgacagttcccggattcccatggacgattttcagaat
aattctgctttagaatcttcatctgcaccagtcttggaacgtgattctctcttttcggac
agtgagaggacaatgaatattcagggtgttcagccagagtcagcgtgccttattgctact
gccactgtcagcatattcagtgagtgtgataaagatgaaggaagtgagaaggttttaaca
gctgcacagaaaaaagctcagcgtataatggagtcctttgaaaatccattcagaatgtat
ttgccttcagaacagaatcctgcctacgtttcacagtctgcaaagtttgacccatcatca
aaaatttacgaaatcagcaatcgatggaagttgatgagtaagacacaagtacagaaggaa
tccagggatgaagcaaaaaagaaagcagctcagcagtcagctgctcgtgaccaagcacag
aaggagtacaaagaggcaacagaaaacattgtgtctgttcgtcagcaagctatgcaggag
caagctaataggaagagggagagggtcatgagtgaaacagcaccagaactgccaaaacca
gagaagaaacggccaaaagcctcccagcaaccagaggagctggaagcaccgaagcagttt
accccctttgattacagcaagttcaacttcaaagtgtttgcgggaagcagcaaatcgaag
cagtcagcacagtttgatcccgccagacaagttcacacaggcaagaaatttgctggagcc
aacaaacttcaacaaccggctggaaaccgaagcatgtcctacctggcagggaaagctgat
aggggttccaagcaccactggccaaagagatag
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