Lagopus muta (rock ptarmigan): 125703470
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Entry
125703470 CDS
T09141
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lmut04515
]
125703470 (CLSTN1)
Cell adhesion molecules [BR:
lmut04515
]
Cadherins
Cadherin related
125703470 (CLSTN1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Glyco_hydro_16
Toxin_R_bind_N
EphA2_TM
V_ATPase_I
PFF1_TM
SID-1_RNA_chan
Cadherin_C_2
Neur_chan_memb
Zip
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
125703470
NCBI-ProteinID:
XP_048823960
LinkDB
All DBs
Position
21:complement(3461313..3496228)
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AA seq
971 aa
AA seq
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MPLPARRLLLLAALLCGGAAAARVNKHKPWIETTYHGIITENDNTVLLDPPLIALDKDAP
LRFAESFEVTVTKEGEICGFKIHGQNVPFEAVVVDKSTGEGIIRSKEKLDCELQKDYTFT
IQAYDCGKGPDGANAKKSHKATVHIQVNDVNEYSPVFKEKSYKATVIEGKRYDNILKVEA
VDADCSPQFSQICNYEIVTPDVPFAIDKDGYIKNTEKLSYGKEHQYKLTVTAYDCGKKRA
AEDVLVKISIKPTCKPGWQGWSKRIEYEPGTGSLALFPSMRLETCDEPITSIQATVELET
NHIGKGCDRDTYSEKSIHRLCGAASGTAELLPSPSSAANWTIGLPTDNGHDSDQVFEFNG
TQAVKIPDGVVTVNLKEPFMISVWMRHGPGTKEKETILCNSDKTDMNRHHYTLYLHNCRL
VFLFRQDPSEGKTYKPAEFHWKLNQVCDKEWHHYVLNVEFPAVTLYVDGVSYDPFPVTED
YPLHPSKIETQLVVGACWQEYTGNENDNETLPETSAGGELRMAQFFRGNLAGLMIRSGKL
ENKKVIDCLYTCKEGLDLQIADGVGKGVKIHMNPSQSAVTVEGDDIDRVDKAMQHISYLN
SRQFPTPGIRRLKITSTVKCFNEEACVSIPSVEGYVMVLQPEEPKISLSGINHFARSASE
FESSEGISLFPELRIISTITREVEPDGDGDEDPTVQESLVSEEIMHNLDTCEVTVVGEEL
NQDQESLEVDMTRLQQKGIEMSSSNLGMIITGVDTMASYEEVLHLIRYRNWHTVSLFDRK
FKLVCSELNGRYVSNEFKVEVNVIHTANPIEHANHIAAQPQFVHPVHHTFVDLSGHNLAN
PHPFSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALT
ITVNPMETYEDQHSSEEEEEEEEEESEDGEEDDITSAESESSEEEEGEQEEDQQNVNRQQ
QLEWDDSTLSY
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgccgctccccgcccgccgcctgctgctgctggccgcgctgctctgcggaggagccgcg
gccgctcgagttaacaagcataagccatggattgaaacgacgtatcatgggataatcaca
gaaaatgacaacacagttctcttggacccccctttaatagccctggacaaagatgcacct
ctgcgttttgcagagagttttgaggtgacagtcaccaaagaaggtgagatttgtggattt
aaaattcatgggcaaaatgtcccctttgaagcagtggtagtggataaatccactggtgag
ggaataatacgctccaaagaaaaactcgactgtgaactgcagaaggactacacgttcacc
atacaggcctatgactgtgggaagggaccagatggagcaaatgcaaaaaaatcccacaaa
gcaacagtacacattcaggtgaatgatgttaatgagtattctccagtgttcaaagagaaa
tcgtacaaggcaacagttattgaagggaagaggtatgacaacatcctgaaagtggaagcg
gtggatgcagattgctcacctcagttcagccagatctgcaactatgaaattgtaactccg
gatgttccttttgctattgacaaagatggttatataaaaaacacagaaaagttgagctat
ggcaaagagcatcagtataaactgacagtaactgcgtatgactgtgggaagaagagagct
gctgaggatgtattggttaaaattagcattaagcctacatgcaagcctggctggcaaggt
tggagcaaaagaatagaatatgagcctggtactggttctttagcactcttcccaagtatg
cgtttggagacatgtgatgaaccaataacctcaattcaggcaacagttgaactagaaacc
aatcatattgggaaaggctgcgatagagacacctattctgagaaatccattcacagactc
tgtggtgctgcttctggcacagctgaactgcttccttctccaagtagtgctgcaaactgg
acgataggacttcctactgataatggtcacgacagcgaccaagtctttgagtttaatggc
acacaagctgtgaagattccagatggtgttgtcacagtcaatctgaaagaacccttcatg
atttcagtgtggatgaggcatgggcctggaaccaaagagaaagagacaattctttgcaat
tcagacaagacagatatgaatcgacaccactacaccctgtacctgcacaactgccgcctt
gttttccttttccgacaagatccttcagagggaaagacatacaagcctgcagaattccat
tggaagctaaatcaagtttgtgacaaagaatggcaccattatgtcctcaatgttgaattt
cctgcagtgactctgtatgtagatggtgtttcatatgatcctttcccagtgactgaagat
tatccgcttcatccttcgaaaatagaaactcagctagtagttggggcatgctggcaagaa
tatacaggaaatgaaaatgacaatgaaaccctgcctgagacctctgcaggtggggagctc
cgcatggctcagttcttccgaggcaatctggcaggtttgatgattcgttctggtaaactg
gagaacaagaaagtgatagattgcctgtatacctgcaaggagggactggatttgcaaatt
gctgatggtgttggcaaaggcgtgaagatccacatgaaccctagtcagtcagcagtgacc
gtagaaggggatgacattgacagagttgataaggccatgcagcacatttcctatctgaat
tctcgccagttccccacacctggaatccggaggcttaaaatcaccagtactgtcaagtgt
ttcaatgaagaggcctgcgtctctattccttctgtggagggatatgtaatggtcttgcag
ccagaggaaccaaaaatcagcctgagtggcatcaaccattttgcccgatctgcttcagag
tttgagagttctgagggcatttctctcttccctgagcttcgcataataagcaccattaca
cgggaggtggagccagatggagatggggatgaagatcctacagtacaagagtctttggtt
tctgaagaaatcatgcataacctggatacgtgtgaggtgacagtggtgggagaagaacta
aatcaagatcaagaaagcctggaggttgacatgacacgattacagcagaaaggcattgag
atgagtagttccaaccttggcatgatcatcacaggagttgatactatggctagctatgag
gaagttttgcatttgatacgctacagaaactggcacacggtttctctttttgacagaaag
ttcaaattggtttgttctgagcttaacgggcgctatgtcagcaatgagtttaaagtagag
gtgaatgttatccacacagctaaccccattgaacacgctaatcacatagctgcacaacca
cagtttgtacatccggtgcaccacacgtttgttgatctgtctggtcacaacctagctaac
cctcatccattttcagttgttccaagtacagccactgttgtgattgtagtttgtgtgagt
ttcctggtttttatgatcattctgggagtgttcagaatccgagccgcacatcagcgaaca
atgcgtgaccaggacactggaaaggaaaatgagatggactgggatgactctgcattgacc
atcactgtgaatcctatggaaacttatgaagatcagcacagcagtgaagaagaggaggag
gaagaggaagaggaaagcgaagatggagaggaggatgacatcactagtgcagagtctgaa
agcagtgaggaagaagaaggcgagcaggaggaggaccaacagaatgttaatagacagcaa
cagctggaatgggatgactctaccctcagttattga
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