Lagopus muta (rock ptarmigan): 125703819
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Entry
125703819 CDS
T09141
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125703819 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmut03000
]
125703819 (ARID1A)
03021 Transcription machinery [BR:
lmut03021
]
125703819 (ARID1A)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125703819 (ARID1A)
Transcription factors [BR:
lmut03000
]
Eukaryotic type
Helix-turn-helix
ARID
125703819 (ARID1A)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125703819 (ARID1A)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125703819 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
125703819
NCBI-ProteinID:
XP_048824761
LinkDB
All DBs
Position
23:complement(337334..413270)
Genome browser
AA seq
2284 aa
AA seq
DB search
MAAQVAPAAASSLGAPAPAELKKAEAQQRDCPPEEAGGEAAAERGGGGGEKQAESEGPPG
KELQDGAESNGGGAGAESDLKSSNGNPGPRPAAAAATLNNNLPEPPGGGGSSDGVGAPQQ
QQPPQQPPPSHPAALPPPAYGFGQPYGRGAQAAAAAAAAAAAAAAFHQHGGQQSPGMAAL
QSGGLEQSYPGPAGAPAGPPPPQNSHGGAEHGFPNHQYNSYYAAGAGRSAGSYPPPPQAY
ALSSPRGSAQSSAQAAAGAKSPAAAAFQQQRFGVMGPSAAGGAGGGGGGGATPQPTATPT
LNQLLTSPSSARGYQGYPGGDYSGGPQDGGAAGKGPAAADMVSQYGGGNGQGWAAAPGGA
PPRSHHAPMSPGSSGGGGGGQSLGRSQQPSSPMDQMGKMRPQPYGGNNPYTQQQGPQAGP
QQGHGYPGQPYGPQTPQRYPMGMQSRTQSTMGSISYAQQIPPYGQQGPSAYGQQSQTPYY
NQQSPHPQQQQPPYSQQTPSQTPHSQPSYQQQQQPQSQAPQLQTSQPAYSQQQSQPPHQQ
SPTPYPQQQSTAQQHQQNQPPYSQQQSQSPYQQQQQQTQQTASSALSQQSSSYPQSQPQQ
QQPAYSQQRFPPPQELSQESFGSQTSSAPSMASSKGQEDMNLNLQSRPSSLPDLSGSIDD
LPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQ
SRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYLQRNPQMPQYSSPQPG
SALSPRQSSGGQMHAGMGPYQQNSMGSYGPQAGQYGPQGGYPRQPNYNALSNANYPSPGM
GGSMNPMAAGSQMHGQTGVPPYSGLPPGRMSHAAMGNRPYGPNMANMPPQVGTGMCPPPG
SMNRKAQEAAAAAMHAAANSIQNRPPGYPNMNQGGMMGTGPPYGQGLNSMAGMINPQGPP
YPMGGNMANNSAGMAASPEMMGLADVKLTPATKMNNKADGTPKAESKSKKSSSSTTTNEK
ITKLYELGGEPERKIWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQV
NKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQ
TKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQ
DAFTDGSDPTFQKRNSMTPNPGYQPGMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFMSS
GQGPNSAMGDPYNRAAGPGMGNMAMGQRPHYPYGGPYDRVRTEPGMGPEGNLAAGTPQPN
IMPSTSESGMYSPSRYPQQQQQQRHDSYGNQFSTQGTSSGSPFPSQQTTMYQQQQQNYKR
PMDGSYGPPAKRHEGEMYNVPYSAGQGQTQQQLPPAQTQQPSQQQAAQPSPQQDLYNQYG
STYPAADRRSAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQSAPEGPQQGAM
WQGRNEIGYSYPNRQSAGSAPQGPAYHGVTRTDDILHSEQRVNHEGPWPSHGNRQPPYGP
SASVPPMTRPPQSNYQTPPSMQNHIPQVSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAG
PPVPASHITPAAVQPPMIRRDITFPPGSVEATQPVLKQRRRLTAKDIGTPEAWRVMMSLK
SGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVG
DPGQRTLLDPQRFCRSSASSHEEGEEDEELQSLNYEEEEDDEEEEVAAFSSKDKAPLECS
EEKLVSKFDKLPIKIVQKNDLFVVDYSDKLGRVQEFESGLLHWRIGGGDTTEHIQTHFES
KMELPMIHKRVSCNSVSRKRAAAESNPSTREGEALPSDSSSEKRITATMDDMLSARPSSL
SGEEEEAKASETEKESKFPFGISPAQSHRNIRILEDEPHSKDETPLCTIQDWQDSLAKRC
ICVSNIIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGV
SCNKVEWWWDCLEVLRENTLVTLANISGQLDLSPYPESICLPILDGLLHWAVCPSAEAQD
PFPTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYGTLVRFLSDRKNP
VCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQAGLMHMQSA
PFESTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFL
IGQS
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaggtcgcccccgccgccgccagcagcctgggcgccccggctccggccgag
ctgaagaaagcggaggcgcagcagcgggattgtcccccggaggaggcggggggtgaggcg
gcggcggagcgcggcggcggcggcggcgagaagcaggcggagagcgagggccccccgggg
aaggagctgcaggacggggccgagagcaacggagggggcgcaggggccgagtccgacctg
aagagctcgaacgggaacccgggccccaggcccgccgctgccgccgccaccctgaacaat
aacctcccggagccgcccggtggcggcggcagcagcgacggggtgggggcgccgcagcag
cagcagccgccgcagcagcctcccccttcccacccggccgccttgcccccgccagcctac
ggcttcgggcagccctacggccggggcgcccaggctgctgccgccgccgccgccgctgcg
gccgccgccgctgccttccaccaacatggcggacaacaaagccctggcatggcagcgctg
cagagcgggggcttggagcagtcttacccggggccggcgggagcccccgcggggccgccc
cctccccagaactcgcacggcggcgccgagcacggcttccccaaccaccagtacaactcc
tactacgcggccggcgccgggcgcagcgccggctcctacccgcctcccccccaggcctac
gccctgagctccccccggggcagcgcgcagagctccgctcaggcggccgccggcgccaag
tcccccgccgccgccgccttccagcagcagcgcttcggggtcatggggccctcggccgcc
ggcggagcaggaggaggaggaggagggggcgccaccccgcagcccacggccacccccacc
ctcaaccagctcctcacctcccccagctccgcccgcggctatcaggggtaccccgggggc
gactatagcggcgggccgcaggacgggggagccgccggcaagggcccggccgccgcggat
atggtctcgcagtacggcgggggcaacggccagggctgggccgcagcgcccggcggggct
ccgccgaggagtcaccacgcgcccatgagccccgggagcagcggcggcggcggcggggga
cagagcctcggccggagccagcagccttcaagtccaatggatcagatggggaagatgagg
cctcagccatatggaggaaacaacccctacacacaacagcagggacctcaggcagggcca
cagcaaggacatggctatccaggacagccctatgggccgcagactccccagagatatccc
atgggaatgcaaagcaggacacaaagtacaatgggcagcatctcgtatgcgcaacagatt
ccaccttacggacagcagggtcccagcgcatatgggcagcaaagccagactccatattac
aaccagcaaagccctcatccccaacagcagcagcctccgtattctcagcagactccatcc
cagacccctcactctcagccttcttatcagcagcagcaacagcctcagtctcaagctcca
cagcttcagacatcgcagcctgcgtattctcagcagcagtcccagccgccccatcagcag
tccccaactccatatcctcagcagcagtccacagcccagcagcaccaacagaatcagcct
ccctactcacagcagcagtcacagtcaccctaccagcagcagcagcagcaaactcagcag
acagcttcctcggctctttctcagcagtcgtcttcataccctcagtcacagccgcagcag
cagcagcctgcatattcccagcaacgcttcccgcctcctcaggagttatctcaagaatct
tttggctcccagacatcatctgctccctcaatggcttccagtaaagggcaagaggatatg
aacttgaatcttcagtcccgaccttctagcctgccggacctgtctggttcaatagatgat
ctacccatgggtacagaaggagccctgagccctggagtaagcacatcagggatttccagc
agtcaaggagagcagagtaacccagctcagtctcctttctctccacatacctctcctcac
ctgccaggcatcagaggaccttccccatcccctgttggttctccagctagtgttgctcag
tcccgctctggtccactttcacctgctgcagtaccaggcaatcagatgccaccacgacca
cccagtggccagtcagacagcatcatgcatccttccatgaaccagtcaagcatagcgcaa
gatcgaggttatttgcagaggaatcctcagatgccccagtacagctctccccagcctggc
tcagccttatctccccgtcagtcttctggaggacagatgcacgctggaatggggccatac
cagcagaactccatgggaagctatggaccccaggccgggcagtacggacctcaaggaggt
tatcccaggcagccaaactacaatgctctgtccaatgccaactaccccagtcccgggatg
ggaggaagcatgaacccaatggcagcagggagccagatgcacgggcagaccggtgtgcct
ccatacagcgggcttcctcccgggaggatgagccacgcagccatggggaacagaccttat
ggacctaacatggcaaatatgcctcctcaggtggggacagggatgtgtcccccaccaggg
agcatgaatcgcaaagcacaagaagcggctgctgccgccatgcacgctgctgccaactcc
atccagaacaggcctcctggttatcccaacatgaaccaaggaggaatgatgggtactgga
cctccttacggacagggacttaacagcatggctggcatgatcaacccccagggcccacct
tatcccatgggtggaaatatggctaacaactcggcagggatggcagcaagtcctgaaatg
atgggtcttgcggatgtcaaattaactcctgcaactaaaatgaacaataaggctgatggg
accccaaaagcagaatccaagtcaaagaagtccagttcctctactacaaccaatgagaag
atcacgaaactctatgagctgggtggtgagcctgagaggaagatctgggtagatcgttac
ctggcctttactgaagagaaggccatgggcatgacaaacctcccagcggttggcagaaaa
cccttagacctttaccggctctacatctcagtgaaggagataggaggattgactcaggtc
aacaaaaacaagaaatggcgtgagttagccacaaatctcaatgtgggcacgtccagcagt
gcggctagttctttgaagaagcagtacatccagtgtctctatgcctttgagtgcaagatt
gagcgaggtgaagacccccctccagacatctttgctgctgctgattcaaagaagtctcag
actaagatacaacctccatctccagcgggttcaggctcgatgcaggggcctcagacacct
cagtccaccagcagctccatggcagaaggaggagacctgaagcctcctactccagcatct
acaccacacagtcagatgcctcctttgccaggcatcaggagtaactcagtgggccttcaa
gatgcctttacagatggcagtgatcccacgttccagaagcggaactccatgactccgaat
ccagggtaccagcctggcatgaatacctccgacatgatgggtcgcatgtcttatgagcca
aataaggatccttacagtagtatgaggaaagctccgggaagcgatcccttcatgtcctca
gggcagggccccaacagcgctatgggtgacccttacaatcgtgctgcaggtccagggatg
ggtaacatggccatggggcagcggccacactatccctacggcggtccttacgacagagtg
aggacggaaccaggcatgggaccagagggcaacttagcagctggaactccacagccaaac
atcatgccttccacctcggaatcggggatgtattctcccagccgctaccctcagcagcag
cagcagcaaagacatgattcctatggcaatcagttctccactcaaggcacatcctcgggc
agccccttccctagccagcaaactaccatgtatcaacagcaacagcagaattacaagcga
ccgatggacggcagctacggcccacctgccaagcggcacgaaggggagatgtacaacgtc
ccgtacagcgcagggcaggggcagacgcagcagcagctgcctccagcacagactcagcaa
ccgagccagcagcaggctgcgcagccttctccacagcaggacctgtataaccagtatggg
agcacataccctgctgctgaccgccgatctgcgggagggccgcagaaccagttcccattc
caatttggcagagacagggtctcagctcccccaggctccaatgctcagcaaaatatgcct
ccccagatgatggggggtcccatccagtctgctccagaaggcccccagcaaggcgccatg
tggcaggggcgcaacgaaatagggtacagctatcctaatcggcagagcgctggctctgca
ccccaggggcctgcttatcacggagtgactcgaacagatgatatactgcattcagaacag
agggtaaaccatgagggaccatggccttcccatgggaatcggcagcctccgtacggcccc
tctgcctctgttcctccaatgactaggccacctcagtctaactatcagacccctcctagc
atgcagaatcacattcctcaggtatccagcccagcacctctgcccagacctctggagaat
cgcacttctcccagtaaatctccatttctgcactcggggatgaaaatgcagaaggcagga
ccgccagtccccgcatcgcacatcacaccagcagctgtacagcctcccatgatacgaaga
gacatcaccttcccaccaggatcagtagaagctactcaacctgtattaaagcaaaggagg
cggctgacagcaaaagatattggaactcctgaagcttggagagtgatgatgtctctgaag
tctgggctgctagctgaaagtacatgggccttagataccataaacatcctgctctatgat
gacaacagcataatgaccttcaacctcagccagttgccaggcctgctggaactcctcgtg
gagtatttccggcgctgcctgatcgagatctttggaatcctgaaggagtacgaggtggga
gacccagggcaaagaacactattagatccccagaggttctgcagatcttcagcttcttct
catgaggaaggggaggaggatgaggaactacagagcctgaactatgaggaggaagaagat
gatgaggaagaggaggtggctgcattttcgagcaaggacaaagcacctctggagtgcagc
gaggagaaattagttagtaaatttgacaagcttccgatcaagattgtgcagaagaatgac
ctgtttgtggtagattattcagacaagctgggacgagtgcaggagtttgagagcggcctg
ctgcactggcggattggtggcggtgacactactgagcacattcagacccactttgagagc
aagatggagctacctatgattcacaaacgagtgtcctgcaattctgtctcgaggaaacgc
gcagcagctgagagcaatccaagcactagggaaggagaggctcttccatctgacagctcc
tcagagaagagaataactgccaccatggacgatatgctttcagcacgtccaagctcatta
tcaggggaggaggaagaggccaaagcttcagaaacagagaaggaaagtaagtttccattt
ggcattagtccagcacagagtcacagaaatataagaattctggaggacgaacctcacagt
aaagatgagacgcccctctgcaccatccaagactggcaggactctctggcgaagcgttgc
atctgtgtctccaacatcatcaggagtttatcgtttgtgccaggcaatgactttgaaatg
tccaaacatcccgggctgctgctgattctagggaaactgattcttttacatcacaagcac
ccggagcgcaagcaggcacccctgacctatgagaaggaggaggagcaggaccaaggggtg
agctgcaacaaggtggagtggtggtgggactgcctggaggtgctgcgtgaaaacacactg
gtcacgctggccaacatttctggccagctggacctgtctccttacccagaaagcatctgt
ttgcctatcctggatggactcctccactgggcagtatgtccatcagcagaggcccaggac
ccctttccaacgctggggccgaatgcggtcctctcccctcagagactggttttggaaaca
ctcagcaaactcagcatccaggacaacaacgtggatttgatacttgcaactccccctttc
agtcgcttggagaagctgtacggcaccctggtgcgtttccttagtgacagaaagaacccg
gtgtgtcgagagatggctgtggtactactggccaacttggcacaaggggacagcctggca
gcgagagcgattgctgtgcagaaggggagcattggcaacttgctgggcttcttggaggac
agcctggccgccacgcagttccagcagagccaggccggcctgatgcacatgcagagcgcg
ccctttgagtcgacgagcgtggacatgatgcgccgagctgctcgggcgctgctcgccctg
gccaaggtggacgagaaccactcggagttcacgttgtacgagtcgcggctgttggacatc
tccgtgtcgcctttgatgaactctttggtttcacaagttatttgtgatgtactattttta
attggccagtcatga
DBGET
integrated database retrieval system
