Lagopus muta (rock ptarmigan): 125704004
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Entry
125704004 CDS
T09141
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03082
ATP-dependent chromatin remodeling
lmut03083
Polycomb repressive complex
lmut04110
Cell cycle
lmut04330
Notch signaling pathway
lmut04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125704004 (HDAC1)
03083 Polycomb repressive complex
125704004 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
125704004 (HDAC1)
04350 TGF-beta signaling pathway
125704004 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
125704004 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lmut03036
]
125704004 (HDAC1)
Enzymes [BR:
lmut01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
125704004 (HDAC1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
125704004 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
125704004 (HDAC1)
BRAF-HDAC complex
125704004 (HDAC1)
REST complex
125704004 (HDAC1)
SHIP complex
125704004 (HDAC1)
MiDAC complex
125704004 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
125704004 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
125704004 (HDAC1)
Chromatin remodeling factors
NuRD complex
125704004 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
125704004
NCBI-ProteinID:
XP_048825223
LinkDB
All DBs
Position
23:complement(5444322..5458024)
Genome browser
AA seq
480 aa
AA seq
DB search
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKRISIRNSDKRISCDEEF
SDSEDEGEGGRKNVANFKKAKRVKTEEEKEEEEKKDEKEEEKAKEEKAEPKGVKEETKST
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacacaggggaccaagcggaaagtctgctactactacgatggtgatgttgga
aactattattatggccagggacaccccatgaagccccacaggatccggatgacccacaac
ctactgctgaactacggcctttacaggaagatggagatatatcgccctcacaaggcgaac
gcggaggagatgaccaagtaccacagcgacgactacatcaagttcctgagatccatccgc
ccagacaacatgtctgagtacagcaagcagatgcaaagatttaacgtcggggaggactgc
cctgtgttcgatgggctgtttgagttctgtcagctctctgctggaggctcagttgccagc
gctgtgaagctgaacaagcagcagacagatattgctgtgaattgggcaggaggcctgcac
cacgctaagaagtcggaggcttctggcttctgttatgtcaacgatattgtcctggctatc
ttggagctcttgaagtatcaccagagggtcctgtatatcgacattgatattcaccatgga
gatggtgtggaggaagccttctacaccaccgaccgagtgatgacagtgtcctttcacaag
tatggagagtacttccctggaacaggggacctgcgggacattggtgcaggcaaaggcaag
tactatgctgtcaactatcccctccgggatgggattgatgatgagtcctatgaggcaata
ttcaagccggtgatatctaaagtgatggagacattccagcctagtgcagttgtcctgcag
tgtgggtcagattctctgtccggagacaggctgggttgttttaatctgaccatcaaaggt
catgccaagtgtgtggagtttgtcaaaagttttaatttgcccatgctgatgctgggggga
ggcggctacacgatccgcaatgtggccaggtgctggacctacgagactgctgtggctttg
gacactgagatcccaaatgaactcccatataatgactattttgagtacttcggaccagac
tttaagctgcacatcagtccctcaaacatgacgaaccagaataccaatgagtatctcgag
aagatcaagcagcgtctctttgagaacctgcgcatgctgcctcatgcccctggcgtccag
atgcagccaattcctgaggatgctgttcaggaagacagtggagatgaagaggaagaggat
cctgagaagcgcatttcaatccgcaattctgataagagaatatcctgtgatgaagaattc
tctgactctgaagatgaaggggaaggagggcgcaaaaatgttgctaactttaagaaggcc
aagcgtgtgaaaacagaagaggaaaaggaggaggaggagaagaaggatgagaaagaagag
gaaaaagcaaaagaggagaaagccgaacccaagggggtgaaggaagagacaaaatccacc
taa
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