Listeria monocytogenes CFSAN006122: Y193_11450
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Entry
Y193_11450 CDS
T03478
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmv
Listeria monocytogenes CFSAN006122
Pathway
lmv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y193_11450 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmv03019
]
Y193_11450 (cshA)
03009 Ribosome biogenesis [BR:
lmv03009
]
Y193_11450 (cshA)
Enzymes [BR:
lmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Y193_11450 (cshA)
Messenger RNA biogenesis [BR:
lmv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Y193_11450 (cshA)
Ribosome biogenesis [BR:
lmv03009
]
Prokaryotic type
rRNA helicases
Y193_11450 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
CMS1
NABP
Motif
Other DBs
NCBI-ProteinID:
AHY98920
LinkDB
All DBs
Position
908230..909783
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AA seq
517 aa
AA seq
DB search
MTKFSEFGLDEKIVKSVNRIGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM
IHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKN
PQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLL
FSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAP
ELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTK
KRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLK
MLAKEPDKTPVHITEERPLPSRGGGGYKGKNGKGGKGGGYRGGSGKGGSYRDRNNSGKGR
RSGGGSGSGGGGNRDRRSGGGEQRSGGNKGNYSQKSK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaattttcggagttcggactggacgaaaaaattgtaaaatcagtaaatcggata
gggtttgaagaagcaacaccaatccaagaaaagacaattccactaggactagcaggtaaa
gacttaatcgggcaagcacaaacaggtactggtaaaacagccgcttttggtcttccaatg
attcacaaaattgaccaaaagagtaacaacgtacaagctttaattattgctccaacacgt
gaacttgcaatccaagtttctgaagagctttataaacttagctatgacaaacatgtacgt
gtgctagcggtttacggtggtagcgatatcagccgtcaaatccgttcacttaagaaaaac
ccacaaatcgtagttggtacgccaggacgtattttggatcatattaaccgtcgcacactg
aaactagaccacgtggaaacacttgtactagatgaagcagacgaaatgctaaacatgggc
ttcattgatgatatcgaaactattctaaaagaagtaccagcagaacgtcaaactttacta
ttttctgcaacaatgcctgatccaattcgccgtatcggtgaacgtttcatgcatagccca
gaacttattcgcattaaagcgaaagaaatgactgcactattaattgaacaattcttcgta
aaagtgcatgaaaaagaaaaatttgacgtattatctcgtttattagacgttcaagcaccg
gaactagctattgttttcggtcgtacgaaacgtcgtgtagacgaactatctcgcgcgctt
gatatgcgtggttacgtggctgaaggtatccacggtgacttgacgcaagcaaaacgtatg
agtgtactacgcaaatttaaagaaggaaaaattgatgttctagttgcaacagacgtagca
gctcgtggacttgatatttccggcgtaacacatgtatataactatgatattccacaagat
ccagaaagctatgttcaccgtatcggtcgtactggtcgtgctggtaaagaaggtatggcg
attactttcgtacaacctcgtgaaatgggttatttacgtattgtggaagaaactacgaaa
aaacgtatgcaaccacttcaagctcctacttgggacgaagcatttgcaggccaattacgc
gtagcaactgaaaaaattcaagaagcaatcacagaagaaaacttagctgactacaaaacg
tttgctaacgaacttcttgaaaaatacgatgcaactgacatcgcagcagcaatgcttaaa
atgttagcgaaagagccagacaaaactcctgtccatattactgaagagcgtccattacca
tcccgtggtggcggtggctacaaaggtaaaaatggtaaaggcggcaaaggtggcggctat
cgcggcggaagcggcaaaggcggaagctaccgcgatcgtaacaacagcggcaaaggtcgt
cgtagcggcggcggaagcggttctggcggtggtggcaatcgtgatcgtcgtagtggcggc
ggagaacaacgcagcggcggcaacaaaggcaactactcacaaaaatctaaataa
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