Listeria monocytogenes SLCC2372 (serotype 1/2c): LMOSLCC2372_1041
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Entry
LMOSLCC2372_1041 CDS
T02220
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmx
Listeria monocytogenes SLCC2372 (serotype 1/2c)
Pathway
lmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMOSLCC2372_1041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmx03019
]
LMOSLCC2372_1041
Messenger RNA biogenesis [BR:
lmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LMOSLCC2372_1041
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
CBY54376
LinkDB
All DBs
Position
complement(1054113..1055780)
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AA seq
555 aa
AA seq
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MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYSYL
VKNKDKIKGLFITHGHEDHIGGVPYLLRDLNIPIYAGKLASALIRNKLEEHGLLRQTKIY
EYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNIFRDVEGRIIFATFASNIYRLQQ
VVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPKDTFIDVHQLNKTPAGNVTILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTTSVNRTINLLYQAGAEVIHGKV
NNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGEFRMQKIHAESAEECGVPEENSFIMANGD
VLALTSETAHVAGKIHAASVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKNSRV
MAGPDIISRGFIYMRESGNLIGEAQGLLTRHLNKVMEQKTTQWSEIKNEITDTLQPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaaaataatgagacagctgttttcgctcttggtggactaggcgaaatc
ggtaaaaacacatatggcgtacaatttcaagatgaaattattctaattgatgcaggaatc
aagttcccagaagacgaacttttaggtattgattatgttattcctgactacagttacctg
gttaaaaacaaagataagattaaaggactttttatcacccacggtcatgaagatcatatc
ggtggcgttccttacctacttcgcgatcttaatatcccaatttacgctgggaaacttgcg
agtgcacttatccgcaacaaattagaagaacatggcttgcttcgtcaaaccaaaatttat
gaatatgaagaagatgacgtttttaaattcagaaaaacaagtatctctttcttccgtaca
acccatagtattcctgatacgtatggtattgttgtcaaaactccatctggtaacatcgtt
catactggtgacttcaagtttgattttactccagttggcgaaccagcaaacctaacaaaa
atggctgaaatcggtaaagaaggcgttctttgtttactatctgatagtacaaatgcggaa
gtaccaaatttcaccatgagtgagcgtgtcgttggcgaaagtattaaaaatattttccgc
gatgtagaaggacgaattattttcgctaccttcgcatctaatatctaccgtttacaacaa
gtagtggaatcctctatcgaaactggtcgtaaaatcgctgtttttggtcgtagtatggaa
tctgctatggaaatcggtaaacaattaggctatattcaagcgccaaaagacacatttatt
gatgtgcatcaacttaataaaacacccgctggaaatgtgactatcctttgtacagggagt
caaggtgaaccaatggctgctctttctagaattgctaacggtacgcaccgtcaaatccaa
attcaaccaggtgacacggtagtcttctcgtcttccccaatccctggtaatacaacgagt
gtaaaccgaacaatcaatttactttatcaagctggtgcagaagttatccatggtaaagta
aacaatatccatacttctggtcacggtggtcaacaagaacaaaaactaatgctacgtttg
atgaaacctaaattctttatgccgattcatggtgaattcagaatgcaaaaaattcatgca
gagtctgctgaagaatgtggtgttccggaagaaaatagctttattatggcaaacggagat
gtactcgcattaacgagtgaaacagctcatgttgctggtaaaatccatgcagcaagcgtc
tatattgatggtagcggtattggcgatatcggtaatattgtccttcgcgatcgtcgtatt
ctttctgaagaaggcctcgtaatcgttgttgtatccattgatatgaaaaattctcgtgtg
atggcaggacctgatattatttcacgtggcttcatttatatgcgtgaatccggtaatctc
atcggagaagcgcaaggcctcctaacgcgacacttaaacaaagtaatggaacaaaaaaca
acgcaatggtctgaaatcaaaaatgaaattacagatactttgcaacctttcttgtacgaa
aaaacaaaacgtcgtccaatgattttaccaataatcatggaagtatag
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