Listeria monocytogenes 08-5923 (serotype 1/2a): LM5923_0102
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Entry
LM5923_0102 CDS
T01164
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lmy
Listeria monocytogenes 08-5923 (serotype 1/2a)
Pathway
lmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM5923_0102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmy03019
]
LM5923_0102
03400 DNA repair and recombination proteins [BR:
lmy03400
]
LM5923_0102
Enzymes [BR:
lmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LM5923_0102
Messenger RNA biogenesis [BR:
lmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LM5923_0102
DNA repair and recombination proteins [BR:
lmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LM5923_0102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
ResIII
zf-CXXC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
ADB69948
LinkDB
All DBs
Position
104147..105919
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AA seq
590 aa
AA seq
DB search
MIEQARAILQQNFGYQDFRNGQVDVISKLCAGEDTLAIMPTGGGKSLCYQIPALLFDGLT
IVVSPLISLMKDQVDALVSEGIAATFINSTLTNREIDIRLDAAFSGELKMLYIAPERIET
PGFQRLIEQVPISLFAIDEAHCISQWGHDFRPSYLTLCDSLDKMTRRPLVIALTATATQA
VSDDICRLLKIRADSVVKTGFSRDNLAFQVVKGQDKDKYLIDYLTKNVTESGIIYASTRK
EVERLHSFLQKKGVESGMYHGGMTDLARKDWQEKFLYDDIRVIVATNAFGMGINKSNVRF
VIHYNIPRNIEAYYQEAGRAGRDGVPSDCILLFSPQDSRIQQFLIEQSEMDDERKQNEFA
KLRQMTGYGYTEICLQKYIVQYFGDDEPNCGKCSNCLDTREATDITILAQQVFSCIKRMG
ERFGKVLIAKVLTGSADQKVKDWRFDELSTYGLMKDASQKDVLQLIDYLTAEKYLQPTDS
QFPSLKLTDRAVSVLRGELKVERKQAKRAEKVKIDVNSDLFEKLREVRRELAAKHKVPPY
IIFSDETLREMCAYMPQTEDALLEVKGIGAMKRDKYGAEFLAVLQQEASK
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgatagagcaagcaagagctattttacagcaaaattttggttatcaagattttcgaaat
ggacaagtagacgttatttcgaaactttgcgcaggagaagacacgctagcaatcatgccg
actggtggcgggaagtcgctttgttaccagattccagcacttctttttgacggtttaacc
attgttgtttctccgctaatttcacttatgaaggatcaagtagatgcgctagtctccgaa
gggattgcagctacttttattaatagtacactgactaatagagaaatagatattcgactg
gatgctgcattttcaggtgagttaaagatgctatatattgccccagaacgcattgaaacg
ccaggttttcagcgtttaattgagcaggtgcctatttcattatttgccatagatgaagcg
cactgtatttcgcagtggggtcatgactttcggcctagctatttgaccttgtgcgatagt
ttggataaaatgaccaggcgtccgctcgttatcgcgcttactgctacagcgacgcaggct
gtttcagacgatatttgccgattattaaaaataagggctgattcagtcgttaaaactgga
ttttccagagataatttagctttccaagtagtgaaagggcaagataaagataaatattta
atagattatttaacaaaaaatgtaacggaatccggaattatttatgcttcgactcggaaa
gaagtagagcgtctgcacagttttttgcaaaaaaaaggtgttgaatccggtatgtatcat
ggcggaatgaccgatttagcacggaaagactggcaagagaagtttctatacgatgatatt
cgagtgattgtggcgacgaatgcttttggaatggggattaataagtctaatgtgcgtttt
gttattcattataatattccgcgtaatatcgaagcgtactatcaagaagctggtcgtgct
ggtcgagacggcgttccaagtgattgtattttgctattttctccgcaagatagccgcatt
cagcagtttttaattgaacaatccgaaatggacgatgagcgcaaacaaaatgaattcgcc
aagctacgccaaatgacgggttatggttatacagaaatttgtttgcagaaatatatcgtc
caatattttggtgacgacgagccaaactgcggaaaatgtagtaattgcttagatacaaga
gaagccacagatattacgattttagcacaacaagttttttcctgtataaaaagaatggga
gagcgtttcggaaaagtattaatcgccaaggttttgacaggttccgcagaccaaaaagtg
aaagattggcgctttgatgaactcagtacttatggattgatgaaagatgcttcccaaaaa
gatgtgttacaactaattgattatcttacagcagaaaaatatttacaaccaactgatagt
caattcccttcattaaaactgacggatagagccgtttcggttttacgaggcgagctaaaa
gtggaaagaaaacaagcgaaacgagctgaaaaagttaaaatagatgtgaatagtgacctt
ttcgagaaattgcgggaagtgcggcgggaactggcagcaaaacacaaagtgccgccatat
atcattttttcagatgaaacgttacgtgaaatgtgtgcatatatgccacaaacggaagat
gcactgcttgaagttaaaggcattggtgcgatgaaacgcgataaatacggtgcagaattc
ttggctgtactgcaacaagaggcatcgaaataa
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