Levilactobacillus namurensis: RIN67_04390
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Entry
RIN67_04390 CDS
T09877
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lna
Levilactobacillus namurensis
Pathway
lna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RIN67_04390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lna03021
]
RIN67_04390 (rpoC)
03400 DNA repair and recombination proteins [BR:
lna03400
]
RIN67_04390 (rpoC)
Enzymes [BR:
lna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RIN67_04390 (rpoC)
Transcription machinery [BR:
lna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RIN67_04390 (rpoC)
DNA repair and recombination proteins [BR:
lna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RIN67_04390 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WNN66337
LinkDB
All DBs
Position
953908..957555
Genome browser
AA seq
1215 aa
AA seq
DB search
MVDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVLDPGDTALERKQLLSERDYRDKVAEYGSKAFKAEMGAEAIKKLL
MAVDLDKEVKELKEELKEATGQKRTRAVRRLDILEAFVTSGNRPEWMVMDAIPVIPPDLR
PMVQLEGGRFATSDLNDLYRRVINRNSRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKFNQMGLPV
PMALELFRPFIMKELVARGLASNIKNAKRQIDREEDDVFNVLEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLVSGKAMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHI
LAPASGKPVVAPSQDMVIGNYYLTMEEAGREGEGMIFTDLNEATLAYRNGLVHWHTRVGV
QVASMPDKPFTDEQRHKIMVTTVGKLIFNNILPKSFPYLNEPTNTNLNGYVPDKYFLEPG
EDIHDYLQNADLIGPFKKGFLSDIIAAVYQQYKVTATSKLLDRIKDLGYDESTKSGLTVG
ISDVTDLKEKPVIIDEAHKKVKTVTKQFRRGLITDHERYERVIGIWNDAKDDIQNALIHS
FEQQNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGEIMELPITSNFREGLTVMEMFIS
THGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREKDCGTDRGLKIRAITDGNEMIEPL
YDRILGRYTQKSVYDPKTGEVIVPKNQMIVEDTAQKIVDAGVQEVTIRSAFTCNTEHGVC
EHCYGRNMATGDEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGNEDITQGLPRVQE
LFESRNPKGKAEITEVTGTVESIEENPAERTKEITIKGEADTRSYTLPITARMRVTEGDF
IHRGAALNYGSVDPKELLRVRDVLSTETYILGEVQRVYRMQGVAISDKHVEIMVRQMLRK
VRIMDPGDTDVLPGTLMDIQDFRRANYQTLISGGIAATARPVILGITKAALETNSFLSAA
SFQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMPDYRQIKPKEVGSASTEGVY
SISDLEKQMQEDSQA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgtcaataagttcgaaagtatgcaaatcggactcgcctcaccagacaagatc
cgcagctggtcttacggtgaagttaaaaagccagaaaccatcaactaccggacgttgaag
ccggaaaaagacggtttattcgacgaacgcatcttcggtcctaccaaggactgggaatgt
gcttgtgggaagtacaaacggatccgttacaagggtgtcgtttgtgaccgttgtggggtt
gaagttacccgttcgaaggtccgccgtgagcggatgggccacatcgaactggctgcccca
gttacccacatctggtacttcaaggggattccaagtcggatgggcttggtcctcgacatg
agtccacgggcgttggaagaaatcatttactttgcttcctacgttgtcttggacccaggt
gataccgcgctggaacgtaagcaattactgtccgaacgggattaccgggacaaggttgcc
gaatacggctccaaggccttcaaggctgaaatgggtgccgaagctatcaagaaattgttg
atggcggttgatttggataaggaagttaaggaattaaaggaagagctgaaggaagccact
ggtcaaaagcggacgcgtgccgttcggcgtttggacatcttggaagccttcgtcacatcg
ggtaaccgtccggaatggatggtcatggatgcgattccggttattccacctgacttgcgg
ccgatggtccagttggaagggggacgttttgcaacgtccgacttaaacgacctgtatcgg
cgggtcatcaaccggaacagccggctcaagcgattgcttgatttaaatgcacctggtatc
atcgtgcaaaacgaaaagcggatgctccaagaagccgttgatgcgttgatcgataatggg
cggcggggtcgtccagtggctggtcctggtaaccggccactgaagtccctgtcacacatg
ctgaaaggtaagcaaggacggttccgtcaaaacttactgggtaagcgggttgactactct
ggacgttccgttatcgatgttggtccatcgttgaagttcaaccagatgggtctgccagtt
ccaatggcactggaattattccggccattcattatgaaggaattggttgctcgaggattg
gcttctaacatcaagaacgctaagcgccaaatcgaccgtgaggaagatgacgtgtttaac
gtcttggaagatgtgatcaaggaacaccctgttctgttgaaccgggcacctacgctgcac
cgtttagggattcaagcatttgaacccgtattggttagtgggaaagccatgcggctgcac
ccactggcatgtgaagcgtacaacgccgatttcgatggggaccaaatggccatccacgtg
ccgttatccgatgaagcccaagctgaagcacggttgctgatgctggcggctcaccatatc
ttggcacctgcttctgggaaaccagttgttgcgccttctcaagatatggttatcgggaac
tactacctgacgatggaagaagccggtcgtgaaggtgaaggcatgatcttcactgatttg
aacgaagcgacgctggcttaccggaatgggttagttcactggcacacgcgggttggggtc
caagtagcctcaatgccggacaagccatttaccgacgaacaacggcacaagatcatggtg
accacggtcgggaagttgatctttaacaacatcctgccgaagtcgttcccatacttgaac
gaaccaacgaacacgaacttgaacggctacgtgccggacaagtacttcctggaaccaggg
gaagacattcatgactacctacaaaatgctgacttgattgggccgttcaagaagggcttc
ttgagtgacattattgcggcagtctaccaacaatacaaagtgacggcaacgtctaagttg
ttggaccggatcaaggacttagggtatgacgaatccaccaagtctgggttaacggtcgga
atttccgacgtgaccgacttgaaggaaaagccagtgatcatcgacgaggcccacaagaag
gtcaagacggttactaagcaattccggcgtgggttgattaccgaccatgaacgttacgaa
cgggtcatcgggatttggaacgatgccaaggacgacattcaaaacgccttgattcacagt
ttcgagcaacagaaccctatctttatgatgagtgattctggtgcccgggggaacatttct
aactttacgcaattagccgggatgcgtggtttgatggctgctcctaacggggaaatcatg
gaactgccaatcacgtcgaacttccgtgaaggcctgacggttatggaaatgttcatttcg
acccacggtgctcgtaaagggatgaccgatacggccctgaagaccgccaactcaggttac
ctgactcggcggctggtcgatgttgcgcaagatgtgattattcgtgaaaaggactgtggt
actgaccgtggtttgaagattcgggccatcactgatggtaacgaaatgatcgaaccactg
tacgaccggattttgggtcgttacacgcaaaagtccgtttacgatcctaagactggcgaa
gtcattgtgccgaagaaccaaatgatcgttgaagataccgcccaaaagatcgtcgatgcc
ggcgttcaagaagtgacgattcgttcagccttcacttgcaacacggaacatggggtttgt
gaacattgttacggccggaacatggctactggtgacgaagttgaagttggggaagctgtc
ggaacggttgccgcgcaatctatcggtgaacctgggacgcaactgaccatgcggaacttc
cataccggtggtgttgccgggaacgaagatatcacccaagggcttccccgggttcaagaa
ttatttgaatctcggaaccctaaaggtaaagctgagattaccgaagttacgggtacggtt
gaatccattgaggaaaaccctgctgaacggactaaggaaatcaccatcaagggtgaagca
gatacgcggagttacacgttgccaatcacggcacggatgcgggtcactgaaggtgacttc
attcaccgtggggctgcgttgaactacgggtctgttgatcctaaggaattgctccgggtt
cgtgacgtgttgtcgacggaaacctatatcttaggtgaagtgcaacgggtctaccggatg
caaggtgtggccatcagtgataagcacgtggaaatcatggttcggcagatgcttcgtaag
gtccggatcatggatccaggtgacaccgatgtcttaccaggtaccctgatggatatccaa
gacttccggcgcgctaactaccagacgttgatttctggtggaattgctgcgaccgctcgt
ccggtaatcttagggattaccaaggcggctttggaaaccaacagtttcttatccgccgct
tccttccaagaaacgactcgggttctgaccgacgcggctatccgcggcaagaacgaccca
ttagttggtctgaaggaaaatgttatcattgggaagattattcctgccggaactgggatg
ccagattaccgacagatcaaacccaaggaagtcggcagtgcttctaccgagggcgtttac
tcaatcagcgatctcgaaaagcaaatgcaagaagactcccaagcttag
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integrated database retrieval system
