Labrys sp. KNU-23: FZC33_25415
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Entry
FZC33_25415 CDS
T06193
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lne
Labrys sp. KNU-23
Pathway
lne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZC33_25415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lne03019
]
FZC33_25415
Enzymes [BR:
lne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FZC33_25415
Messenger RNA biogenesis [BR:
lne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FZC33_25415
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QEN89444
UniProt:
A0A5C1WJU4
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All DBs
Position
1:3461769..3463076
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AA seq
435 aa
AA seq
DB search
MTSEVTFAALGLAEPLLRALDAADYKNPTPIQHKAIPALLEGRDMMGLAQTGTGKTAAFA
LPILQRLSKSRHGAGPKGVRALILAPTRELAIQIDESFRTYGVHMGFRIAVIFGGVNQGS
QVKALSDGVDILVATPGRLLDLQQQRKVRLDKVEILVLDEADRMLDMGFSRDVLKIVDET
PLERQSLLFSATMPKTIKKLGEEILLNPVHVEVTPEVVTVDKIDQHVYHVPASVKRSLLL
HLLNDPAMSRVIVFTRTKHGANRVSGHLDKAGIPSAAIHGNKSQNARQKALEDFRNGSTR
ILVATDIAARGIDVDDISHVINFEMPVDAESYVHRIGRTARAGRSGVAYSFCDPNERDEL
KAIERLTKKPLMVAAPVQGLEADQKHGERGPRHPHQGKPNGKPRNNGQAEKPQSGQPRSG
RSRRPGGRNNQRRAA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccgaagtaacttttgcagcgctcggcctggccgagccgcttttgcgtgcgctt
gacgccgccgactacaagaaccccaccccgatccagcacaaggcgattccggctctcctc
gaagggcgggacatgatgggcctggcccagaccggcaccggcaagacggcggctttcgcg
ctgccgatcctgcagcgcctgtcgaagtcgcgccatggcgccggccccaagggcgtacgc
gccttgattctggcgccgacccgcgaactcgccatccagatcgacgagagcttccgtacc
tatggcgtgcatatgggcttccgcatcgccgtgatcttcggcggcgtcaaccagggctcg
caggtgaaggcgctgtccgacggcgtcgacatcctcgtcgccacgcccggccgcctgctc
gacctgcagcagcagcgcaaggttcgtctcgacaaggtcgagatcctggtgctggacgag
gccgaccgcatgctcgacatgggcttctcgcgtgacgtgctcaagatcgtcgatgagacg
cctctggagcgccagtccctcttgttctcggccaccatgccgaagacgatcaagaagctc
ggcgaggagattctcctcaaccccgtgcatgtggaagtgacgccggaagtggtgacggtc
gacaagatcgaccagcatgtctaccacgtgccggcctcggtgaagcgctcgctgctgctt
catttgctcaatgatccggcgatgagccgcgtcatcgtgttcacccgcaccaagcatggt
gccaaccgcgtgtcgggccatctcgacaaggctggcattccttcggcggcgatccatggc
aacaagtcgcagaatgcacgccagaaggcgcttgaggatttccgcaacggttccacgcgc
atcctggtggcgaccgacatcgccgcccgtggcatcgatgtcgacgacatctcccatgtc
atcaatttcgagatgcccgtggatgccgaaagctatgtgcaccgcatcggccgcacggcc
cgggccggccgcagcggcgtcgcctattccttctgcgatcccaatgagcgcgacgagctc
aaggcgatcgagcgcctgaccaagaagccgctgatggtggctgctccggttcaggggctc
gaagcggatcagaagcacggcgaacgcggtccccgtcatcctcaccagggcaagccgaac
ggcaagccccggaacaatgggcaagccgaaaagcctcagtcggggcagccgcgctcgggg
cgttcgcgccgtccgggcggccgcaacaaccagcgtcgcgccgcctga
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