Labrys sp. KNU-23: FZC33_31320
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Entry
FZC33_31320 CDS
T06193
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lne
Labrys sp. KNU-23
Pathway
lne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FZC33_31320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lne03021
]
FZC33_31320 (rpoC)
03400 DNA repair and recombination proteins [BR:
lne03400
]
FZC33_31320 (rpoC)
Enzymes [BR:
lne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FZC33_31320 (rpoC)
Transcription machinery [BR:
lne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FZC33_31320 (rpoC)
DNA repair and recombination proteins [BR:
lne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FZC33_31320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QEN90524
LinkDB
All DBs
Position
1:4750703..4754905
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEVMNLFNPVAQPQTFDQIKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLMDMTLKDLERILYFEYYVVIEPGLTPLKERQLLSEDEYARAQDEYGEDSFTA
MIGAEAIREMLRAMDLEKIAADLRVEIAESTSELKPKKLAKRLKIIEAFVQSGNKPEWMI
LTAVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDVVLGLYYVTLMSDGEPGQGMVFGNIGELDHAID
NRVVTLHSKIKWRWKGVDAEGNEVTKIYDTTPGRVKLAELLPKNPKISFEAANNLMTKKA
ISALIDVVYRNVGQKEAVIFCDRIMTLGFSNAFKAGISFGKDDIVVPENKWKIVAETDAL
AKDYEQQYNDGLITQGEKYNKVVDAWAKCADRLAKEMMDRISAVKKDDSGRDKPINSIYM
MAHSSARGSPAQMRQLGAMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIITETDCGSEGGIGVRAIVDAGQVVASLGIRVLGRTA
AENITDPSTGTIIVPKGEMIDEKAVDLISASGLQEIKIRSVLTCETKNGVCATCYGRDLA
RGTRVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSNIESTFEGTVKIRNRTV
VRNSDGELIAMARNLAVVVLDHDGTERSVNRVPYGARIKVDDGDKIKRGQRIAEWDPYTR
PVITELDGVIGYEDLVDGISVNESADESTGITKRVVSDWRTSSRSADLRPALVIKGGDGK
IAKLSRGGDARYFLAAESVISVDPGSKVNAGDVIARVPLESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEITGTIQFGRDYKNKRRLVIQPHEADQEPVEYLIPKGKHIHLQDGDVVEK
GDFIVDGNPAPHDILAVKGVEELAAYLVNEIQEVYRLQGVQINDKHIEVIVRQMLQKIEI
TDAGETEFLPSEQVDRIEFEAANLKAVEEGRKPAVGHPVLLGITKASLQTRSFISAASFQ
ETTRVLTEAAVNGKSDTLEGLKENVIVGRLIPAGTGAQIARVREIAKRRDDLILQQKQSE
AGVPAAPAADAEVVALPAAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaacccggtagcgcagccgcagaccttcgatcaa
atcaagatctcgattgcttcgccggaaaagattctttcctggtcctacggcgagatcaag
aagcctgagaccatcaattatcgcacgttcaagcctgagcgtgacggcttgttctgcgcg
cgcatcttcgggccgatcaaggattacgaatgcttgtgcggcaagtacaagcgcatgaaa
tacaagggcgtcatctgcgagaagtgcggcgtcgaagtcacgctgtcgcgcgtccgccgc
gagcgcatgggccacatcgagctcgctgcgccggttgcccacatctggttcctgaagtcg
ctgccgagccgcatcggcctcttgatggacatgacgctcaaggatctcgagcgcatcctg
tacttcgaatattatgtggtgatcgagcccggcctcaccccgctgaaggagcgtcaactc
ctctccgaggatgagtacgcgcgcgcccaggacgagtatggcgaggacagcttcactgcc
atgatcggcgccgaagccatccgcgagatgctgcgcgccatggatctggagaagatcgcg
gcggacctgcgcgtcgagatcgccgagtcgacctcggagctcaagcccaagaagctcgcc
aagcgcctgaagatcatcgaggccttcgtccagtcgggcaacaagcccgaatggatgatc
ctgacggccgtgccggtcatcccgccggacctgcgtccgctcgtcccgctggacggtggt
cgcttcgcgacgtcggatctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgc
ttgaagcggctgatcgaactgcgtgcgccggatatcatcatccgcaacgagaagcgcatg
ctgcaggaggctgtcgacgcgctgttcgacaacggccgccgtggccgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgtgtcgactattccggccgttcggtcatcgtcgtgggt
cccgaactcaagctgcaccagtgcggcttgcccaagaagatggcgctggagctgttcaag
cccttcatctattcgcgtctcgacgcgaaggggctgtcggctaccgtcaagcaggccaag
aagctggtcgagaaggagaagccggaagtctgggatatcctcgacgaggttatccgcgag
catccggtgctgctcaaccgcgccccgacgctgcatcgtctcggcatccaggccttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtctgcaccgccttcaat
gcggacttcgacggtgaccagatggccgtgcacgtcccgctgtcgctcgaggcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggccaatggccagccg
atcatcgtgccgtcgcaggacgtcgtgctcggcctgtattatgtgacgctgatgtcggac
ggcgagcccgggcagggcatggtgttcggcaatatcggcgaacttgatcatgcgatcgac
aacagggtcgttacgctgcattcgaagatcaagtggcgctggaagggcgtcgatgccgaa
ggcaacgaggtcaccaagatctacgacaccacgcccggccgcgtgaagctggctgagctg
ctgccgaagaatccgaagatctccttcgaggccgccaacaatctgatgacgaagaaggcg
atctccgccctcatcgacgtcgtctatcgtaatgtcggtcagaaggaagcggtcatcttc
tgcgaccgcatcatgacgcttggcttctccaacgccttcaaggcgggcatctccttcggc
aaggacgacatcgtcgtgccggagaacaagtggaagatcgtcgccgagaccgacgccctc
gcgaaggactacgagcagcagtacaatgacggcctgatcacccagggtgagaagtacaac
aaggtcgtcgatgcctgggccaagtgcgccgatcgcctcgccaaggagatgatggatcgc
atttcggccgtgaagaaggacgacagcggccgcgacaagccgatcaactccatctacatg
atggcgcattcctcggcccgcggttcgccggcccagatgcgtcagctcggcgccatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctcaccgtgctcgagtacttcaactcgacccacggcgcccgcaagggtctggcc
gacaccgccttgaagacggcgaactcgggttatctgacgcgtcgtctcgtcgacgtcgcc
caggactcgatcatcaccgagaccgattgcggctctgaaggcggcatcggtgtgcgcgcg
atcgtcgatgcgggccaggtcgtggcttcgctgggcattcgtgtcctcgggcgtaccgcg
gccgagaacatcaccgacccctcgaccggcaccatcatcgtgccgaagggcgagatgatc
gacgagaaggcggtcgacctgatcagcgcctcgggcctgcaggagatcaagatccgttcg
gtgctcacctgcgagaccaagaacggcgtctgcgccacctgctatggtcgcgacctggca
cgcggcacgcgcgtcaacatgggcgaagccgtcggcgtcatcgcggcacagtcgatcggt
gaaccgggcacgcagctcaccatgcgtaccttccacatcggtggcgctgcgcagatcaac
gagcagtcgaacatcgagtcgaccttcgagggtacggtcaagatccgtaaccgcaccgtc
gtgcgcaattcggatggcgagttgatcgccatggcccgtaacctggctgtcgtggttctc
gaccatgacggcacggagcgctcggtcaaccgcgtcccctacggtgcccgcatcaaggtg
gacgacggtgacaagatcaagcgcggccagcgcatcgccgagtgggacccctatacccgc
ccggtgatcaccgaacttgacggtgtgatcggctatgaggatctggtcgacggcatctcg
gtcaacgagagcgctgacgagtcgactggcatcaccaagcgcgtcgtctccgattggcgg
acgtcgagccgctcggcggatctgcgtccggctctggtgatcaagggcggcgacggcaag
atcgccaagctgtcgcgtggcggtgacgcccgctacttcctggcggccgaatccgtcatc
tcggtcgatcctggctcgaaggtgaatgctggcgacgtcatcgcccgcgtgccgctggag
agcgccaagacccgcgacatcacgggcggtctgccgcgtgtggccgagttgttcgaggct
cgtcgtccgaaggatgcggcaatcattgccgagatcaccggtacgatccagttcggtcgc
gattacaagaacaagcgtcgtctcgtgatccagccgcatgaggccgatcaggagccggtc
gaatatctgatcccgaagggcaagcacatccatctccaggacggcgacgtcgtcgagaag
ggtgacttcatcgtcgacggcaacccggccccgcatgatattcttgcggtcaagggcgtc
gaggaactggcggcctacctggtcaacgaaatccaggaagtctaccgcctgcagggcgtg
cagattaacgacaagcacatcgaagtgatcgtccggcagatgttgcagaagatcgagatc
accgacgccggtgagaccgagttcctgcccagcgagcaggtcgaccgcatcgagttcgag
gcggccaacctcaaggcggtcgaagaaggcaggaagcctgcagtcgggcatccggtgctg
ctcggcatcaccaaggcttcgctgcagacgcgttcgttcatctcggcggcctccttccag
gagaccacccgcgtgctcaccgaagctgccgtcaacggcaagtcggatacgttggaaggc
ctcaaggagaacgtcatcgtcggccgcctcatcccggccggtaccggtgcccagatcgcg
cgtgtccgcgagatcgccaagcgccgcgacgatctcatcctgcagcagaagcagtccgag
gccggcgttcccgcggcaccggctgcagatgccgaagtcgtggctctgcccgcggcggag
taa
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integrated database retrieval system
