Liquorilactobacillus nagelii: BSQ50_01965
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Entry
BSQ50_01965 CDS
T06235
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lng
Liquorilactobacillus nagelii
Pathway
lng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ50_01965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lng03400
]
BSQ50_01965
Enzymes [BR:
lng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ50_01965
DNA repair and recombination proteins [BR:
lng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSQ50_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
MFD_D3
IstB_IS21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUJ31436
UniProt:
A0A3Q8CFP7
LinkDB
All DBs
Position
417699..421247
Genome browser
AA seq
1182 aa
AA seq
DB search
MKIEEIFLKLPEINDLIKRVKQSTGENFLLTGVQPAIKPLLLQTYLQQLKKPILIVEDTL
NHAQGLVDELIALLGPNQVNFFPVEETMAAEAAIASPEFRAARIQTLAGMQVPKITVTAA
SGIGYPLLPPVQWREQIRQLKPGMNLDLNKFIAFLSSVGYQRQQLVAKKGEFAVRGSIVD
IYPFDQLNPIRIDLFDTEIDSIREFSASNQRSLQNLDCITVLPASEYPLDAAQQAHALAV
LKKQYQKVSTSAVQKEFRENLNNINYKLTAALTARQFPAWAAAFKRGLLAEKNSLLDYLP
DKGVVFWDDLPRIVESQRLQQQEQMAWETNQLASGKLFEASQPTTTIKEWQKKDQHNSIF
LALFRKGMGKLTFSSIADIQVRMIQQFFGQMPLLKTEMQRWEKQQQTVIFSINNPDRIRK
VQQTLIDFAIPVEINTTKKLNLGQPQLVQIGFNHGFELPQLKLVVVTESELFQKVKAKQP
RRLTMENTERLKSYTDLKKGDYVVHVNHGIGRFLGIKTISDRGKHQDYLTIEYQDAGKLF
VPVKQIDRIQKYVSAEGKSPHLNKLGGSDWEKTKRRVAAKVEDIADELVELYAKRETEKG
FAYSLDDEFQHEFEAAFAYTETPDQLRSAREIKHDMQQSKPMDRLLIGDVGYGKTEVALR
AAFKAIQDGKQVAFLVPTTVLAQQHYETMLSRFEGFPVEIGILSRFRTQQQVKQTLKKLA
VGQLDIVVGTHRLLSKDVKFKDLGLLIVDEEQRFGVKHKEKIKELRSSIDVLTLTATPIP
RTLNMSMLGVRDLSVIETAPLNRFPIQTYVIEQDYSLIADAVHREINRGGQTFYLHNRVA
DIERTVTELKTMIPEARIGYIHGQMSEAQLERILLDFINGEFDVLVTTTIIETGIDIPNV
NTLIVEDADKMGLAQLYQLRGRVGRSNRMAYAYFMYRPDKVLTEISEKRLEAIKDFTELG
SGFKIAMRDLAIRGAGNLLGRQQHGFIDSVGYDLYVQMLKDAVAKKQGKQVRLVSDAEID
LDLEAYLPSEYIADPRQKIEIYKRIRQLQNQAQFDEVQADLLDRFGDYPSSVANLLEIGR
LKMLADQIQVKSIQQVDRKFIIIFDKQFANYLTARDLLEALAQTTLKATIKNESGCFNLI
LNQQPKSELLEVITQFEKLFAFLADSENQRSKGKKNETKTKQ
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgaagaaatttttttaaaattacctgaaattaatgatttaattaaaagagta
aagcagagtactggagaaaattttttattaacgggagttcaaccagcaataaagccctta
ttgctgcagacttatttgcagcaattaaaaaagccaatactgatagttgaagatactcta
aatcacgcccaaggattagttgatgaattgattgcgttattaggtcccaatcaagttaat
ttttttccagttgaagagaccatggctgcagaagctgctattgcttcaccggagtttcga
gcagcacgaatccagactttggctggaatgcaagttcctaaaataacagttacggctgct
agcggaattgggtatccattgttgcctcctgttcagtggcgagaacaaatcaggcaacta
aaaccaggaatgaatcttgatttaaataaatttatagcttttttgagtagcgttggctat
cagcggcagcaattagtggctaaaaaaggcgagtttgctgttcgtggttctatcgtggat
atctatccttttgatcaactgaatccgatcagaattgatttattcgatacagagattgat
tcaattcgtgaattttcagcgagcaaccaacgtagcttgcaaaacttggattgtattaca
gttttaccagccagtgaatatccgcttgatgctgctcagcaagcccatgctttagcggtg
ttaaaaaaacagtatcaaaaagttagcacatcagctgttcaaaaagagtttcgagaaaat
ttaaataatattaactataagttgacagcggccttgacggcgagacaatttccagcttgg
gcagccgcttttaaacgcgggctgctagctgaaaagaattctttacttgattatttgccg
gataagggagttgttttttgggatgatttgccacgaatagttgaaagccagcgcttgcag
caacaagaacaaatggcttgggagacaaatcaattggctagtggaaagttattcgaagct
agtcaaccaacaactacaattaaggaatggcaaaaaaaagatcagcataactcaattttt
ttggctcttttccgtaaaggaatgggaaagctgacatttagttcaattgctgatattcag
gttcgaatgattcagcagttttttggacaaatgccactcttgaagacagaaatgcagcgt
tgggaaaaacaacagcaaacagtaattttttcaattaacaatccagatagaattagaaaa
gttcaacaaacactgattgattttgcaataccggttgaaattaatacgacgaaaaaatta
aatttaggtcaacctcaattagttcaaattggttttaatcacggttttgaattgccccag
cttaaactcgtagtagtaactgaaagtgaactttttcaaaaagttaaagctaagcagcca
cgccggttgacaatggaaaatactgagcgtctaaaaagctatactgacttaaaaaagggc
gattacgttgtccatgttaatcacggaatcggacgctttttgggtattaagactattagt
gatcgtggaaaacatcaagattatctgacgattgaatatcaagatgctggtaagttattt
gtaccggttaaacaaattgatcgtattcaaaaatatgtttcagctgaaggaaaatcccca
catttaaataaactgggtggtagtgattgggagaaaaccaaacgccgggtagcagctaaa
gttgaggatattgcagatgagttagttgaactgtatgctaaacgtgaaactgaaaagggc
tttgcctactcactagatgatgaatttcaacatgagtttgaagcggcatttgcatatacg
gagactcctgaccagttgcgtagtgcacgtgagatcaaacatgatatgcagcagagcaaa
ccaatggatcgtttgctaattggtgatgtgggttatggcaagactgaggtggcattacgc
gcggcctttaaagcaattcaagatgggaaacaggtagcctttttagtaccgacgacggtt
ttggcacagcagcattatgaaacaatgcttagccgttttgagggatttccagtagaaatt
ggaattttgtcacgctttagaacgcaacagcaagttaaacagactttaaaaaaattagca
gttggtcagctagatatcgtagttggaactcatcgactattatcaaaggatgttaagttt
aaagatttaggtttattaatcgttgacgaagaacagcgcttcggagttaaacataaagaa
aaaattaaagagttgcgttcttcgattgacgtattaactttgacggctacgccaattcca
agaacattgaatatgtcaatgttgggagttcgggatttatcggtaattgaaactgcacca
ttaaatcgatttccgatccaaacttatgtaattgaacaagactatagtttaattgctgat
gcggttcaccgagaaatcaatcgtggtggtcagaccttttatttgcacaatcgcgtggcc
gatattgaacgaacagttacggaattgaaaacaatgatacctgaagcacgaattgggtat
attcatggtcaaatgtcagaagcacaacttgaacgaattctattggatttcatcaatggg
gaattcgatgtcttagttaccacaacaattattgaaacgggaatcgatattcccaatgtt
aacaccttgattgtggaagatgctgataaaatgggattagcacaattatatcagctgcgt
ggtcgagtaggtcggagcaatcggatggcctatgcttactttatgtatcgcccagataaa
gttttaactgagatcagtgaaaagcgactagaagcaattaaagactttaccgaactaggc
tctgggtttaaaattgcgatgcgtgatttggcaatccgtggtgccggtaacttgttggga
aggcaacaacatggctttatcgattctgtcggttatgatttgtatgtgcaaatgttaaaa
gatgcggtcgctaagaagcaaggaaaacaggttcgcttagtcagtgatgcagaaattgat
ttggatttagaagcatacttaccaagtgaatatattgctgatccacgtcagaaaattgaa
atctataaacgaatacgccaattgcaaaatcaagcacagtttgatgaggttcaggctgat
ctactagatcgttttggcgactacccaagttcagttgccaatttgttagaaattggccga
ctaaaaatgttggccgatcaaattcaggttaaatcaattcagcaagtggaccgcaaattc
ataataatttttgacaagcaatttgctaattatttaacagctcgtgacctactagaagct
ttagcacaaacaaccctgaaagcgacaatcaaaaatgagagtggatgctttaatttgata
ttgaatcaacagccaaaatcagaactgcttgaggttattacacaatttgaaaagttgttt
gcttttttagcagacagtgagaatcaaaggtcgaaagggaagaaaaatgaaacaaaaacg
aagcaatag
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