Liquorilactobacillus nagelii: BSQ50_02660
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Entry
BSQ50_02660 CDS
T06235
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lng
Liquorilactobacillus nagelii
Pathway
lng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ50_02660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lng03019
]
BSQ50_02660
03016 Transfer RNA biogenesis [BR:
lng03016
]
BSQ50_02660
Enzymes [BR:
lng01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSQ50_02660
Messenger RNA biogenesis [BR:
lng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSQ50_02660
Transfer RNA biogenesis [BR:
lng03016
]
Prokaryotic type
tRNA degradation factors
BSQ50_02660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1CSD-TOTE-2
S1_RRP5
RNase_II_C_S1
WHD_MCM4
Motif
Other DBs
NCBI-ProteinID:
AUJ31552
UniProt:
A0A3Q8CYY1
LinkDB
All DBs
Position
554472..556802
Genome browser
AA seq
776 aa
AA seq
DB search
MDREKIKASLLNILKNSPDQEFTVQELADDLMMKRSEQFKQVVQALAQLEQEKKITLNQN
GAFTLARDESMPTVVGEFHATERGFGFVTVDPELPDYFINPTQTMSALNGDQVEVAELRS
ADKKMGRGPEGKIVAIIQHALTQVVGEFFIDETSEYPKHILGEVKLKDKKLSRYRFLIGK
DGLHPVPGEIILAEITAYPNSHLPGILEGIATKVIGNVNDPGIDILQVVYQHDLPTAFPD
DVMEQVAKIPDEVTPAEKVGRVDLTDQDLVTIDSIESKDLDDAVTAWKLPNGHYHLGVHI
ADVSHYVVPGTPLDREAYQRGTSVYLADRVIPMLPPKLSNGICSLNPQVERLAMSCEMEI
DNQGQVIAHRIFPSVIKTTERMTYKAVNNILESHDQKTIERYQKLVPMFQAMAELHKILQ
KMRHRRGAIEFEDDEAKIILDSQGHPIDIVLRQRGLGEKLVESFMLAANETVAAHFHELK
VPFIYRIHETPKPEKMLNFMEILSSIGLQVKGNVHNVKPKMLQDILKEVAGKPEETMVST
MLLRSMQQAKYAADPLGHFGLGAEDYTHFTSPIRRYPDLLVHRLIRFYREKGLETEEKDH
LSEKIPEIALHSSQMERRAVDTERDTDAMKKAEYMADHVGDEFEAVVSSVTKFGMFVALP
NTVEGLVHINEMHDDFYEFLEKQMALVGRKTKRTYRIGQPIKVKLLSVDVDQKEVNFKIM
NPQAAPKTDLLKKYGSINQPQKRSHQHNFQNKNQHRNIKQQRGGFRPFKEKFKKTH
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggacagagaaaaaattaaagcaagtttattgaatattttaaagaattcgcctgatcag
gaatttacggtacaagaattggccgatgatttgatgatgaagcgctcagaacaatttaaa
caagttgttcaagctttagcacaacttgaacaagaaaaaaaaataacactcaatcaaaat
ggagcttttacacttgctcgcgacgaatcgatgccaactgtagtcggcgaattccatgca
actgagcgtggctttggctttgtaacagttgacccagagttaccagattactttatcaat
ccaactcaaacaatgtctgctttgaatggtgatcaggttgaagttgctgaattacgttcg
gctgacaaaaagatgggacggggaccggaaggcaagatcgtcgcaataattcaacatgcc
ttgacacaagtggtgggagaattttttattgatgaaacttctgaatatccaaaacatatt
ttgggagaagtcaagctaaaggataaaaagttaagtcgttatcgctttttaatcggtaaa
gatggattacatccagttcccggtgaaattattttagcagaaattacggcttatcctaat
tctcatttaccaggaattctagaaggaattgcaactaaagttattggtaatgtaaatgat
cctggaattgatattcttcaagtagtttatcaacatgatttgccaacagcttttccagat
gatgtaatggaacaggttgctaaaattcctgatgaagtaactccagctgaaaaggttggc
agggttgacttaacagatcaagatctagtaacaattgatagtattgaatctaaggatttg
gatgatgctgttactgcgtggaagttgccaaatggtcactatcatttgggggttcatatt
gcagatgtttctcattacgttgttccaggaactccgctagatcgtgaagcttatcagcgt
ggaacttcagtttatttagctgatcgagtaattccgatgttaccaccgaaactttcaaat
ggaatttgttcattgaacccgcaggtcgagcgattagcaatgagttgtgaaatggaaatt
gataatcaaggtcaagtaattgctcatcgaatctttccaagtgttattaaaacaactgaa
agaatgacttacaaagcagttaataatattttagagtcacatgatcagaaaacaattgaa
cgttatcaaaaattggttccaatgtttcaagcgatggcagagttacacaaaattttacag
aaaatgcgacatcgtcgtggagcaattgaatttgaggatgatgaggcaaagattattctt
gattctcaaggacatccaattgacattgttttacgtcaacggggtctaggtgagaagtta
gttgaatcatttatgctagcagcaaacgaaactgtcgcagcacattttcatgagttgaaa
gtaccttttatctatcgaattcatgaaacaccaaaaccagaaaaaatgttaaactttatg
gaaattctatcgagtattggcttacaggttaagggaaatgttcataatgttaaaccgaaa
atgttgcaagatattttgaaagaagttgctggcaaaccggaggaaacgatggtatcaaca
atgctgttgcgttcaatgcaacaggctaaatatgctgctgatccattaggacattttggt
ttaggagcagaagactatacacattttacttctccaattagacgttatccagatttgtta
gttcatcgattaatcagattttatcgagaaaagggactggaaacggaagaaaaggatcat
ttgtccgagaagattcctgaaattgctttgcatagttcacaaatggaacgtcgagcagtt
gatactgagcgagataccgatgcgatgaagaaagcagaatatatggcggatcatgttggt
gatgagtttgaagctgttgtgagctcggttactaaatttggaatgtttgtagcactaccg
aatactgttgaaggacttgtgcatattaatgaaatgcatgatgatttttatgagttctta
gaaaagcaaatggcattggtgggtcgaaagaccaagagaacttatcgaattggtcaacca
atcaaagttaaacttttgtcggttgatgttgatcaaaaagaagttaatttcaaaattatg
aatccgcaggcagcaccaaaaacagatttattaaagaaatatggttcaattaaccagcca
caaaagcgttcacaccaacataattttcaaaataaaaatcagcatcgtaatataaaacaa
cagcgcggtggttttcgaccttttaaggaaaaatttaaaaaaacacattaa
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