Enterobacter sp. SGAir0187: CWR52_10380
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Entry
CWR52_10380 CDS
T05333
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lni
Enterobacter sp. SGAir0187
Pathway
lni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWR52_10380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lni03019
]
CWR52_10380
03016 Transfer RNA biogenesis [BR:
lni03016
]
CWR52_10380
Enzymes [BR:
lni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CWR52_10380
Messenger RNA biogenesis [BR:
lni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CWR52_10380
Transfer RNA biogenesis [BR:
lni03016
]
Prokaryotic type
tRNA degradation factors
CWR52_10380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AVH17579
LinkDB
All DBs
Position
complement(2160087..2162528)
Genome browser
AA seq
813 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPKA
VEEQIESLREEVPEESKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
NKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKGGNGKTSGKRRQAGKKVNFEPDSAFRGEKKQKPKAA
KKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaatattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcaactggtctttacccgccgccagtgctacgcgctgccggaa
cgcctcgatctgctgaaagggaccgtcattggtcaccgcgatggctttggcttcctgcgc
gtggaaggccgtaaggacgacctttacctctcatccgaacagatgaaaatgtgcatccac
ggcgaccaaattctggcgcagccgctgggcgccgaccgtaaaggccgccgcgaagcgcgc
gtcgtgcgcgttctggtgccaaaaaccagccagattgtcggccgctactttaccgacgcg
ggcgtggggttcgtggtgcctgacgacagccgtctgagcttcgacatcctgatcccacct
gaagaggtgatgggcgcccgcatgggctttgtggtggtagtggaactcacccagcgccca
acccgtcgcaccaaagcggtaggtaaaatcgtcgaagtgctgggcgataacatgggcacc
ggcatggccgttgatatggcgctgcgcacccacgaaattccgtacatctggccgaaagcg
gttgaagagcagatcgaaagcctgcgtgaagaagtgccggaagaatccaaagtgggccgc
gtggatctccgctccctgccgctggtcacgatcgacggtgaagacgctcgcgactttgat
gacgccgtctactgcgagaaaaaacgcggtggcggctggcgtctgtgggtagcgattgca
gacgtaagctactatgttcgtccgcataccccgctggataacgaagcgcgcagccgcggt
acctcggtctacttcccgtcgcaggttgtaccgatgctgccggaagtgctctctaacggt
ctgtgctccctgaacccgcaggttgaccgcctctgtatggtgtgtgagatgaccatctcc
aacaaagggcgcttaaccggttacaagttctacgaagcggtgatgagctcgcatgcgcgt
ctgacctataccaaggtctggcatatgctgcagggcgaccaggatctgcgcgaacagtac
gcgccgctggtcaaacacatcgaagagctgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgcggcgggatctcgtttgagagcgaagaggcgaagtttatcttcaacgcc
gagcgccgcattgagcggatcgaacagacccagcgtaacgatgcgcacaagctgatcgaa
gagtgtatgattctggcgaacatctcggcggcacgcttcgttgagaaagccaaagaaccg
gcgctgttccgtattcacgataaaccgtcgacggaagccatcaccgcgttccgctccgtg
ctggccgaactgggcctggagctgccgggcggcaacaagccagagccgcgcgattacgcc
gagctgctggaatccattagcgatcgtcctgatgcagaaatgctgcagacgatgctgctg
cgctcaatgaagcaggcgatttacgatccggaaaaccgcggtcacttcggccttgcgctg
cagtcttacgcccactttacgtcgccgatccgtcgttatcctgacctctctctgcaccgt
gcaatcaagtatctgctggcgcaggagcagggacataaagggaacaccaccgaaaccggt
ggctaccactattcgatggaagagatgctgcagctgggtcagcactgctccatgaccgaa
cgccgtgccgatgaggccacccgcgacgtggcggactggctgaagtgtgactttatgctg
gaccaggtaggtaacgtctttaaaggcgtgattgccagcgtgaccggctttggtttcttc
gttcgtctggacgagctgtttatcgacggtctggtgcacgtctccagtctggacaacgac
tactaccgcttcgaccaggtcggtcagcgcctgattggcgagtctggcggccagacctat
cgtctgggcgaccgcgtggaagtgaaggttgaggccgtgaatatggacgaccgtaaaatc
gacttcagcctgatctccagcgagcgcgccccgcgtaacgtcggtaaaaccgagcgcgaa
agagcgaaaaaaggcggaaacggcaaaacgagcggcaagcgccgtcaggccggtaagaag
gtgaacttcgagccggacagcgcgttccgcggcgagaagaagcagaagccgaaggcggcg
aagaaagaagcccgttcagcgaagaaaccttccgcgaagacacagaaaatagcggccgcc
accaaagcgaagcgcgcggctaagaaaaagcaggcggagtaa
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