Enterobacter sp. SGAir0187: CWR52_11465
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Entry
CWR52_11465 CDS
T05333
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lni
Enterobacter sp. SGAir0187
Pathway
lni03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lni00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWR52_11465 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lni03021
]
CWR52_11465 (rpoC)
03400 DNA repair and recombination proteins [BR:
lni03400
]
CWR52_11465 (rpoC)
Enzymes [BR:
lni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWR52_11465 (rpoC)
Transcription machinery [BR:
lni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWR52_11465 (rpoC)
DNA repair and recombination proteins [BR:
lni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWR52_11465 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AVH17773
LinkDB
All DBs
Position
complement(2375995..2380218)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIENAGSSEFLEGEQVEYSRVKIANRELEANGKIGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgagctggcgtctccaactgctcacatctggttcctgaaatctctg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcttatgtggtaatcgaaggcgggatgacgaacctggaacgtcatcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgatgcgaagatg
ggtgcggaagctattcaggccctgctgaagagcatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccactggtaccgctggatggtggtcgtttc
gcaacgtccgatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggtcgtcgtggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggaactgttcaaaccattc
atctacggcaagctggagttgcgaggactcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtctgggtatccaggcatttgagccggta
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccagcgaacggtgagccaatcatt
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgcaaac
ggcgaattcgttgcgaaaaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttc
gctgaccagactatgtacaccggctttgcgtatgcagcgcgttcaggtgcatctgttggt
atcgatgacatggtcatcccagagaagaaacacgagatcatctctgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagttatcgatatctgggcagcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcagaccgaaaccgtgattaaccgtgacggcgtagaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacgcgtcgtctg
gtagacgttgcgcaggatctggttgtgaccgaagacgattgtggcaccctcgaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccactgcgcgatcgcgtactg
ggtcgtgtgaccgcggaagacatcctgaagccgggcaccgcagacattctggttccacgc
aacaccctgctgcacgaacagtggtgtgacctgctggaagcgaactctgttgactccgtg
aaggtgcgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgtgaactccagcggtaaactggtcatcacttcccgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gcggttatggcgaaaggtgatggcgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccacacaccatgccggttatcaccgaagtaagtggtttcatccgcttcactgacatg
attgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcttctctggtg
gttctggattctgctgaacgtactaccggcggtaaagatctgcgtcctgcactgaaaatc
gttgatgctcagggtaacgacgttctgatcccaggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgtacagctggaagatggcgtacagatcagctctggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggacatcaccggtggtctgccacgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtatcatctccttcggtaaagagaccaaaggtaagcgccgtctggttatcactccagta
gatggcagcgaaccgtacgaagagatgattcctaagtggcgtcagctcaacgtgttcgaa
ggtgaacgcgtagaacgtggtgacgtggtttccgacggtccagaagcgccgcacgacatc
ctgcgtctgcgtggtgtgcatgctgttactcgttacatcgttaacgaagtacaggacgta
taccgcctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagcaaccatcgaaaacgcgggcagctccgagttcctggaaggcgagcaggtt
gaatactcacgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaaatcggtgcg
accttctcgcgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatcgttccaggaaacgactcgtgtcctgaccgaagccgctgttgcaggtaag
cgtgatgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggttatgcgtaccatcaggatcgtatgcgtcgtcgtgctgcgggcgaactgccagct
gcaccgcaggtgactgctgaagatgcatccgcgagcctggcagaactgctgaacgcaggt
ctgggtggttccgacaacgagtaa
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integrated database retrieval system
