Enterobacter sp. SGAir0187: CWR52_15930
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Entry
CWR52_15930 CDS
T05333
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lni
Enterobacter sp. SGAir0187
Pathway
lni02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lni00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CWR52_15930 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lni03021
]
CWR52_15930 (rpoD)
Transcription machinery [BR:
lni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CWR52_15930 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
AVH18578
LinkDB
All DBs
Position
complement(3265116..3266963)
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AA seq
615 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEESDDDTADDDNSIDPELAREKFAELRTQYEVTRDTIKAK
GRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKDDVYRGLQKLQQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgttgctggctgaaacctccaacaacactgacgaagatgcggaagaa
gctgctgcacaggtactgtccagcgtggaatctgaaatcgggcgtaccactgacccggtc
cgcatgtacatgcgcgaaatgggtaccgttgaactgttgacccgcgaaggcgaaattgac
atcgcaaaacgcatcgaagacgggatcaaccaggttcagtgctctgttgccgagtacccg
gaagcgatcacctatctgctggagcagtacgatcgcgttgaagcggaagaagcgcgcctg
tctgacctgatcaccggttttgtcgacccgaacgctgaagaagatatggcgcctaccgcc
actcacgtcggttctgagctgtctcaggaagagatggatgacgacgaagacgaagatgag
gaagagagcgacgacgataccgcggacgatgacaacagcatcgacccggagctggcgcgc
gagaagtttgccgagctgcgtacccagtacgaagtgacgcgtgacaccatcaaagcgaaa
ggccgcagccacgctgccgctcaggaagagatcctgaagctgtctgaagtgttcaaacag
ttccgcctggtgccaaaacagttcgactacctggtgaacagcatgcgcgtgatgatggat
cgcgtacgcacccaggaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccg
aagaagaacttcatcaccctcttcaccggcaacgaaaccagcgaaacctggttcaacgcg
gctatcgcgatgaacaagccatggtctgaaaaactgcacgacgtgaaggacgatgtctat
cgtggtctacagaagctgcagcagattgaagaagagaccggcctgaccatcgagcaggtt
aaagatatcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagag
atggttgaagcgaacttgcgtctggttatctctatcgccaagaaatacaccaaccgtggt
ctgcagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagataag
tttgaataccgtcgtggttataagttctccacctacgcaacctggtggatccgtcaggct
atcacccgctctattgcggatcaggcgcgcaccatccgtattccggtgcatatgattgag
accatcaacaagctcaaccgtatttcccgccagatgctgcaggagatgggccgcgagccg
acgccggaagagctagccgagcgcatgctgatgccggaagacaagatccgtaaagtgctg
aagatcgccaaagagccaatctccatggaaacaccaatcggtgatgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgctggactctgccaccaccgag
agcctgcgtgccgcaacgcacgacgtgctggctggcctgaccgcccgtgaagcgaaagtg
ctacgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaagctg
cgtcacccaagccgctctgaagtgctgcgtagcttcctggacgactaa
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