Paucilactobacillus nenjiangensis: F0161_06095
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Entry
F0161_06095 CDS
T06900
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lnn
Paucilactobacillus nenjiangensis
Pathway
lnn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lnn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F0161_06095 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lnn03021
]
F0161_06095 (rpoD)
Transcription machinery [BR:
lnn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F0161_06095 (rpoD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QER67470
UniProt:
A0A5P1X0R2
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All DBs
Position
complement(1197728..1198867)
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AA seq
379 aa
AA seq
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MEKKKEEKIISNLEDFDQKKYDAAVGKLIRDFKKDKEIKYDDLTDKIATPFGLVEDGMEN
LISNIEDAGISVVDENGDPDPRALKTEKEISSKELKDTSAPTGIKINDPVRMYLKEIGRV
NLLKADEEVKLAERIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLM
KAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQD
LGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAD
HAAYELLKEQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKQLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaaaaagaagaaaaaattatttcaaacttggaagatttcgatcaaaagaaa
tatgacgctgcagttggtaagttaatccgtgactttaaaaaagacaaagaaatcaagtat
gatgatttaactgacaaaattgcgacaccttttggcttagttgaagatggtatggaaaac
ttaatttctaacattgaagatgctggaattagtgttgtcgatgaaaatggtgatccagat
ccacgtgccctcaagaccgaaaaagaaatttcaagcaaagaattaaaagacacttctgca
ccaactgggattaagattaatgatcctgtccggatgtatttgaaagaaatcggtcgtgtt
aacttgttgaaagctgacgaagaagttaagttagctgaacgaattgaagccggtgatgaa
gaagctaagcaagaacttgctgaagctaacttacgtttggtggtttcgattgctaaacgt
tatgttggacgtgggatgcaattccttgatctaatccaagaaggtaacatgggcttgatg
aaggccgttgaaaagtttgattaccgtaaaggtttcaaattctcaacttatgctacttgg
tggattcgtcaagcgattacgcgtgcgattgccgatcaagctcgaacaattcggattcca
gttcatatggtggaaaccattaacaaattaattcggattcaacgtcaattacttcaagat
ttaggtcgcgaacctacacctgaagaaattggtgccgaaatggatatgccaactgaaaaa
gttcgtgaaatcttgaagattgctcaagaaccagtttcattggaaacaccaattggtgaa
gaggacgattcacatttgggtgatttcattgaagatcaagacgctaccagtccagctgac
catgcggcatatgaattgctaaaagaacaacttgaaaacgtgcttgataccttgactgat
cgtgaagaaaacgtgcttcgtctacgtttcggattagatgatggtcggacacggacactt
gaagaagtgggtaaagtatttggtgttactcgtgaacggattcgtcaaattgaagccaaa
gcacttcgtaagcttcgccatccatcacgttcaaaacaattaaaagatttcctagaataa
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