Paucilactobacillus nenjiangensis: F0161_08910
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Entry
F0161_08910 CDS
T06900
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lnn
Paucilactobacillus nenjiangensis
Pathway
lnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0161_08910 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lnn03019
]
F0161_08910 (rnr)
03016 Transfer RNA biogenesis [BR:
lnn03016
]
F0161_08910 (rnr)
Enzymes [BR:
lnn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F0161_08910 (rnr)
Messenger RNA biogenesis [BR:
lnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F0161_08910 (rnr)
Transfer RNA biogenesis [BR:
lnn03016
]
Prokaryotic type
tRNA degradation factors
F0161_08910 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
S1CSD-TOTE-2
DUF7179
eIF-3_zeta
Motif
Other DBs
NCBI-ProteinID:
QER67951
UniProt:
A0A5P1X657
LinkDB
All DBs
Position
complement(1725133..1727541)
Genome browser
AA seq
802 aa
AA seq
DB search
MTESNLKIKINQHLHDNSELSFSVEKLASQIDMAAAEQFTPIVQALAQLERDGEVEVTDS
GEFKAVVKQNALTGVFHGNDKGFGFVAYDPDEPDIYVNPDHTMHALNGDEVEVEIIRPGR
PDKSQGPEGTVKKIVTHHYSQVVGEFKSNKTANFVGEVVLKDKKIATFKFMVTDKGLVPT
DGEIVTADVTEYPTNEAPKTMIGVAKQVIGAKDEPGIDILASVYAHDLPHEFPEDVIEQA
NAISETVLEEEKVGREDITDQPLVTIDSIESKDLDDAVVAWKMDNGNYHLGVHIADVSHY
VQEGTPLDREAFNRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLSMSCEMEINAEGQV
VNHRIFTSVMKSHARMTYKAVNAILEAHDEKTRDEYKELVPMFEEMGDLHRILLKSRKRR
GAIDFDAPEAKIIVDENGHPTDIELRERGLSERMIESFMLAANETVAEHFKKLQVPFLYR
VHETPDGERVNNFFEFLSVFGINVKGDPNNLKPKMLQNVLKDVADTPEAQMVQVMMLRSM
KQARYSEDSLGHFGLGAEFYTHFTSPIRRYPDTTVHRLIKWYEKHGTDAAAKEKYRDQLP
EIAEHTSVTERRGIDTEREVDSMKKAEFMEDHIGETFDAVVSSVMKFGLFISLPNTVEGL
IHISVMNDDYYEYVEKHLALVGRKFHHIFQIGQPVKVKLLRVDKDQREIDFELVDPAEAP
LTKLRVPRQDDRRGGRRGGQGNRNGNNRNSNSRNGNHSNGNRNSNSNNNNGHRSNNTSRN
NGEQNNRQINRGQARKSPRDSH
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaagtaatttaaaaataaaaattaaccaacatttgcatgacaactctgaacta
agtttttcagttgaaaagttggcttcgcaaatagatatggctgcagcggaacaatttacg
ccaattgttcaagccctggcccaattagaacgtgacggtgaagttgaagtgaccgacagt
ggtgagttcaaagccgttgtaaaacaaaatgccttaactggtgtttttcatggtaatgat
aagggctttggatttgtcgcatatgatccggacgaaccagatatctatgttaatcctgac
cacaccatgcatgctttgaatggtgatgaagtcgaggttgaaatcattcgtccaggtcgt
cccgataagtctcaaggacctgaaggaaccgttaaaaaaattgtaactcatcactattca
caagtggtgggtgaatttaagtcgaacaaaactgctaattttgtcggtgaagtcgtctta
aaagataagaagattgcaaccttcaagtttatggttactgataaaggcttagttccaacc
gatggagaaattgtcactgcagatgtgacagaatatccaactaatgaagcacctaaaacc
atgattggtgtagctaaacaagttattggtgcgaaagacgaaccaggaattgatatcttg
gcttctgtttatgcacatgatttacctcacgaatttcctgaagatgtcatcgaacaggct
aatgcgattagcgaaacagtacttgaagaagaaaaagttggccgcgaagacattacggat
caaccactggtaacgattgacagcatcgaatcaaaggatttggatgatgcagtcgtggca
tggaaaatggataatggcaattaccatttaggggttcatattgctgacgtgagccactat
gttcaagaaggaacaccgcttgaccgtgaagcctttaatcgtggcacatcggtgtatctg
actgaccgagtaattccaatgttacctcgtcgtttatcaaatggaatttgttcattgaac
ccagatgttgaacgtctatcgatgagttgtgaaatggaaattaatgctgagggacaagtt
gttaaccatcgaatctttaccagtgtgatgaagtctcacgcgcgcatgacttacaaagca
gtcaatgcaattttggaagctcatgatgaaaaaactcgtgatgaatataaagaacttgtg
ccaatgtttgaagaaatgggtgatttacaccgcattcttttgaagagccgtaaacgccgg
ggtgcaattgattttgatgcgccagaagctaaaatcattgttgatgaaaatggccatcca
actgacattgaattgcgtgaacgtggtttgtcagaacgtatgattgaatcatttatgttg
gcggccaacgaaaccgttgctgaacactttaaaaaactccaagtaccattcttatatcgt
gtccatgaaacgccagatggtgaacgagtaaataatttctttgaattccttagtgtcttt
ggaattaacgttaagggtgatccaaataacttgaaacctaagatgttacaaaatgtcttg
aaggatgttgcggacacacctgaagcacaaatggttcaagtgatgatgcttcgaagtatg
aaacaggcgcgttattcagaggactcattaggtcactttggattaggcgcagaattttac
actcactttacttcaccaatccgtcgctacccagatacgacggtacatcgcttaattaag
tggtacgaaaaacatggtactgacgccgcggctaaagaaaaatatcgtgatcagttacct
gaaattgcagagcatacatctgtcacagaacgtcgtggaattgacacggaacgtgaagta
gatagcatgaagaaagctgaatttatggaagaccacatcggtgaaacttttgacgctgtg
gttagttccgttatgaagtttggactctttatctccttacctaacacggttgaaggtcta
attcatatcagtgtgatgaatgatgattattacgaatatgttgaaaaacatttagcatta
gttggtcgtaaattccatcacattttccaaattggtcaaccggtcaaagtgaagctgtta
cgggtggataaggatcaacgtgaaattgactttgaacttgtagacccagcagaagcacca
ttgactaaactccgcgttccacgtcaagacgatcgtcgcgggggtcgccgcggtggccaa
ggaaaccgtaacggcaataatcgtaatagtaacagccgtaatggcaaccattctaatggt
aaccgcaacagcaatagtaataataacaatggacaccgtagtaacaatacttctcgtaat
aatggcgaacaaaataatcgtcaaatcaatcgaggacaagcacgaaagtcaccaagagat
tcacactag
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