Paucilactobacillus nenjiangensis: F0161_09690
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Entry
F0161_09690 CDS
T06900
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lnn
Paucilactobacillus nenjiangensis
Pathway
lnn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F0161_09690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lnn03400
]
F0161_09690 (mfd)
Enzymes [BR:
lnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F0161_09690 (mfd)
DNA repair and recombination proteins [BR:
lnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F0161_09690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
MFD_D3
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QER68081
UniProt:
A0A5P1X6I8
LinkDB
All DBs
Position
complement(1886244..1889786)
Genome browser
AA seq
1180 aa
AA seq
DB search
MKLENLLVQMPEFKTIESGINEQKRQLITGVSGSAETLLISALHSQLQQSQIIVTDDLAH
MELITNDLLNRLPDNQVFQFPVEENLAVEVATSSPEFRLQRVLALDALLSDQPVVIVTST
SGLKRRLPAAQTFQNAQLKIKIGSDIKLTEARTQLSSMGFQFEKMVVRPGDFAIRGSILD
IYPLNTDNPVRIDLFDTEVDSLRYFDATTQRSIENVEEVSILPATDFVIDATDFDRIHDS
LAKQLSKASGKLDDEQRNQLEQNISPILKALKHQQITPELIEFSQDVYADDVSILDYLPK
TGMVLTEDYPRILAKEDDVDEGQTSWLEAQAASQKIISDQSLNHDVSQLITSDKHAQAFF
ALFQKGMGKIRFAQITNLIARNMQQFFGQMPVLKAEMQRFNKQQLTTVILVNSAERLTKV
ENTLNDFGIQITLTEKDEIQTGVSQLVNDSLANGFELPGANLVVITESELFKTVQKKRAR
RQTLENAERIKSYTDLKPGDYVVHVNHGIGQFTGIETIESQGVKQDYIAIEFQKNAKIFV
PVTQLNLVQKYVSSESKKPKINKLGGSEWAKTKRSVAAKIEDIAQELVELYAAREAEVGF
QFPRDDDYQQQFEDDFPYTETPDQLRSSSEIKKDMEGVKPMDRLLVGDVGYGKTEVALRA
AFKAVEGGKQVAFLVPTTILAQQHFDSMQRRFEGYPVNVAMMSRFRTRKQLNETEQQLMT
GECDIVVGTHRILSKDVKFKDLGLLIIDEEQRFGVKHKERLKQLKSSVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPAGRFPIQTYVMEQNAGALRDAVMREMGRGGQVYYLHNRVAD
IEKTVAEISVLVPEARVGYIHGQMTEVQLESVLYDFIRGEYDVLVTTSIIETGVDIPNVN
TLFVEDADRMGLSQLYQIRGRIGRSNRVAYAYFMYQQNKVLTEVSEKRLSAIRDFTELGS
GFKIAMRDLSIRGAGNLLGQQQHGFIDSVGYDLYSQMLADAVAVKRGEERIVKTDTEIEV
GIEAYLPTEYVDDQRQKIELYKSIRSLENEERLMDLENDLIDRFGDFPVQVENLLAVGRL
KMYADLAQLDKIRKQKDYIFVTLSEKASEQITARELLKDLTVTAFKATIGDEAGKTMIKL
VIQPKMTQKDWMEQLTVFVKALSEHFEVAGEQDNEESTTA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattagaaaaccttctggtgcagatgccagagtttaagacaattgaatctggaatt
aatgaacaaaagcggcaattaattactggtgtttcaggttcggcggaaacgttgttaatc
agtgcacttcatagccaattgcaacaatcccaaattattgtcactgacgatttggcacat
atggaattgattaccaatgacttgttgaaccgtttgccggacaatcaagtcttccaattt
ccagtggaagaaaatttggcggttgaagtcgcaactagttcacctgaatttcgtttacag
cgggtccttgctttggacgcgcttttaagcgaccaaccagtggtaattgtcacttcgact
tccggtttgaaaagaagattaccagcagcgcaaacttttcaaaatgcacaactaaaaatc
aaaattggttctgacatcaagttaactgaagcacggacgcagctcagctcaatgggcttt
cagtttgaaaaaatggtcgttcgtcctggagattttgctattcgtggctcaattttagat
atttatccattaaatactgataacccggttcggattgatttatttgataccgaagtggat
tcattgcggtattttgatgcgaccacacaacgcagtatcgaaaatgttgaggaagtttca
atcttacctgcgactgacttcgtgattgatgcaactgactttgatcgaattcatgattca
ttagcgaaacaattaagtaaggcgagcggtaagctagatgacgagcaacgaaaccaatta
gaacaaaatatttcaccaattttaaaggccttgaagcatcaacaaattacaccggaattg
attgaatttagtcaggatgtatatgcagatgacgtctcaatcttagactatttacccaag
acagggatggtgctgaccgaagattatccccggattttagctaaggaagatgatgttgat
gaaggccaaacaagttggttagaagcacaagcagccagtcaaaaaatcattagtgatcaa
tctttgaatcatgacgtgagtcagttaatcaccagtgataagcatgcgcaagctttcttc
gcactctttcaaaagggaatgggtaagattcggtttgcacaaattaccaatctaattgcg
cgcaacatgcaacaattttttggccaaatgccagtgttgaaagccgaaatgcagcgattc
aataagcaacagttgacgacagttattttagtcaatagcgccgaacgattgaccaaggtt
gaaaacacgctcaacgattttggtattcagattactttgactgaaaaagatgaaattcaa
actggcgtatcccaattagtcaatgatagtttggctaatggatttgaattgccaggggcg
aatttggttgtcattaccgaatcagaactgtttaaaacggtccaaaaaaagcgggcacga
cgccaaacactcgaaaatgcggaaagaattaaaagttacacggaccttaaaccaggggat
tatgtcgttcatgtaaaccacgggattggtcaattcacaggcattgaaacgattgagagc
caaggcgttaaacaagattacatcgccatcgaatttcaaaaaaatgccaaaatttttgta
cccgttactcaacttaacttagtgcagaagtacgtttcctctgaatccaagaaacctaaa
attaacaaattaggtggttctgaatgggcgaaaactaaacgcagtgtcgctgctaaaatc
gaagatatcgctcaagaactagtagaattgtacgcggcacgggaagctgaagttggcttc
caatttccacgtgatgatgattatcagcagcaatttgaagatgattttccgtatacggaa
acgccagatcagttgcgcagtagttctgaaattaaaaaggacatggaaggcgtcaaacca
atggatcgactgttggtcggggatgttggatacggtaaaacagaagtcgccttacgagcc
gcctttaaagcagttgaaggtggtaagcaagtcgcgttcttagtacccactacaattttg
gctcagcaacattttgattcaatgcagcgtcgtttcgaaggctatccagttaatgtggcc
atgatgtctcgcttccggacgcgcaagcaactcaatgaaacggaacaacaattgatgacc
ggcgagtgtgatatcgtcgttgggacgcatcgcattttgtcaaaagacgttaaatttaag
gatttaggcttattaattattgatgaagaacaacgctttggagtgaaacataaggaacga
ttgaagcagttaaaaagctcagttgatgtgttgaccttgacggctaccccaattcctcgt
actttgcatatgtcaatgttgggtgtgcgtgatttatctgtgattgaaacgccaccagct
ggtcgttttccaattcaaacgtacgtgatggaacaaaatgccggtgcacttcgtgacgcg
gtcatgcgtgaaatgggtcgtggtggccaggtttattatttgcataaccgggttgctgat
attgaaaaaaccgtggcagaaatttcggtgctggtgccagaggctcgcgtgggctatatt
cacggacaaatgactgaagttcagctcgaatcggtactatatgactttattcgcggtgaa
tacgacgtgctcgtgaccacttcaatcattgaaactggggtcgatattccaaacgtcaat
acgctcttcgtcgaagatgcggaccggatgggactatcacagctttaccagattcgtggt
agaattggacgaagtaatcgggtggcctatgcgtatttcatgtatcaacaaaacaaagtt
ttaacggaagttagtgaaaaaaggctctctgccattcgtgattttaccgaattaggttcc
ggctttaaaattgccatgcgtgatttgtcgattcgtggggcgggtaacttattaggccaa
caacaacacgggttcattgattctgtgggttatgatttgtattcgcaaatgttggcggat
gccgtcgcagtcaaacgtggcgaagaacggattgttaaaacagatacagagattgaagtt
ggcattgaggcctatttaccaactgaatatgtcgatgatcaacggcaaaaaattgaatta
tataagagtattcgttcgctggaaaatgaagagcgtctgatggacttagaaaatgatctg
attgatcgattcggtgatttcccagtgcaggttgaaaatctattagcagttgggcggcta
aaaatgtatgctgatttagcccagcttgataaaattaggaaacaaaaagattatattttc
gtgaccttatcagagaaggccagtgaacaaatcacagctcgcgaattattgaaagactta
accgtgacagcctttaaagccacaatcggggatgaggctggtaaaacgatgattaaattg
gtaatccaaccgaagatgacacaaaaagattggatggaacagttgaccgtctttgtgaaa
gcgttaagtgaacatttcgaagttgcaggagaacaggacaatgaagaatcaacgactgca
tag
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integrated database retrieval system
