Leptospira noguchii: MAL08_14395
Help
Entry
MAL08_14395 CDS
T08353
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lno
Leptospira noguchii
Pathway
lno03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MAL08_14395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lno03021
]
MAL08_14395 (rpoC)
03400 DNA repair and recombination proteins [BR:
lno03400
]
MAL08_14395 (rpoC)
Enzymes [BR:
lno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MAL08_14395 (rpoC)
Transcription machinery [BR:
lno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MAL08_14395 (rpoC)
DNA repair and recombination proteins [BR:
lno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MAL08_14395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UOG37239
LinkDB
All DBs
Position
1:complement(3344069..3348283)
Genome browser
AA seq
1404 aa
AA seq
DB search
MRSHNDFESITIRLASPERIKEWSYGEVKKPETINYRTLKPEKDGLFCEKIFGTTKDWEC
YCGKFKSIRYKGVVCDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDM
TVNQLKSVLYFEKYVIIDPADSGRNRGELIDEEEYHGYLDEYGDKFVAGIGADAIKELLA
RIDVDAEARMIRQKIQDKDKISDKRILKRLEVLEAFRDSGNRPEWMVLDIVPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVDALFDNSR
RKRAVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHEMGLPKK
MALELFKPFIMKRLVDLDLAPNIKSAKKKVEAEDKEVFDVLEYVVKEHPVMLNRAPTLHR
LGIQAFLPILVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLTPKAQLETWMLMLSPHNIL
NPANGHPICGPTQDIVLGIYYLTSELPSEPGVPLKSFSNLDEVHYAIDRGVVEFRTKISV
FHQGKILETTPGRLIFNTILPEGYAYVNKPLSDKETNRIIADVYDKYGPAKTVLMLDDIK
KLGYRYATLFAPTISIEDIRVSPGKVGLVGDANKEVEKADSEYRKGIITNEERRKKVIEI
WTKTNDLITESMFKELEKDKGGFNPVFIMAASGARGSKQQIRQLAGMRGLMAKPSGEIIE
LAIRSNFREGLSVLEFFISTHGARKGLADTALKTADAGYLTRRLVDISQDVIISEDDCGT
EESISLGIVKEGENVIVSLNDRVFGRYTAEDVIDPVTDQVVYPRNTLITREVGQKVENLG
YDKIRVRSPLTCESKQGVCICCYGMDMARLIPAEIGEAVGTIAAQSIGQPGTQLTMRTFH
IGGAASAKVQEKEHKVSYTAIVNNINGRLIRNDKDHNIFSRRGSIVIQRLIQQYKIEELS
NLRVENGQKVDKGELVATSPNGENITSEMPGTIHIENGIFRILGEEAVIPVKTGTVVNVK
VNDITRPNQPLAEFDPYNEVGISEIDGTVQWMDLEIGKNVRRDEDVKTSNILLKVIEQRR
EKLNPRITVISGSSREEYSVPVDAIISVQDGDKVKGGDILFKIPTVAEKTRDITGGLPRV
DELFEARRPKDATTLAETDGKIEISGEIVKEKRVLYIHPDNSDLEKVKVTIPIGKQIRVR
NGDFVKRGDQIDDGNLDPHDILRVKGVTALQVYLVQEVQEVYRLQGVHINDKHIEVVVRQ
MLRKVLITDSGDTSFVNQQQIDRLVFNEENKRVIAEGGSPAESVPILLGLTKASLNTESF
FSAASFQETTKVLTDAAIKGKTDNLMGLKENVIIGHMIPAGTGTKKYKDIAVFKSAYGDL
DRPLEEEEEEEIPQAIAEESDADE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagatcccataacgactttgaatcgattacaatccgcttagcttctcccgaaaggatc
aaagaatggtcctacggcgaagttaaaaaacccgagaccatcaactaccggaccttaaaa
cccgagaaagacggtcttttctgcgagaagattttcgggaccacaaaggactgggaatgt
tactgcggtaaattcaagtccatccgttataagggtgtggtttgcgacaagtgcggggtc
gaggtaactcactccaaagttcgtcgggaaagaatggggcacatagaactcgcggctccc
gtttctcatatctggtattaccgttccgttccttccagaatgggacttctgctcgatatg
actgtgaaccaactcaagagcgttctctactttgaaaaatacgtaatcatcgatcctgcg
gattcgggaagaaaccgaggcgaacttatcgacgaagaagaataccacggttatctggac
gagtacggtgacaagtttgtagccggaatcggtgcagacgcgattaaggaacttcttgct
cgtatcgacgtggacgcggaagcaagaatgatccgccaaaaaatccaagacaaggacaag
atttccgataaaagaattctgaaacgtctcgaagttctcgaagcgttccgtgattccgga
aaccgtcccgagtggatggtgcttgatatcgttcccgtcattcctcccgaacttcgtcct
atggttcagctcgaaggcggacgttttgcaacctccgacttgaacgacttataccgtcgt
gtgatcaaccgtaacaaccgtcttaaaagacttctcgcattaaaagctcccgagatcatc
gttcgtaacgaaaagagaatgttgcaagaagcggtagacgctctctttgacaactctcgc
agaaaacgcgcggtcaaaggaaagggaaaccgtcctttaaaatccatctccgatatgctc
aaagggaaacaaggtcgtttccgtcagaaccttctcggtaagagggtagactactccggt
cgttccgtgatcgtagtcggtcccgaactgaaataccacgagatgggacttccaaagaaa
atggctttggaacttttcaaacctttcatcatgaagagacttgtggatctggacttagct
ccgaacatcaagtccgctaaaaagaaagtagaagccgaagacaaagaagttttcgacgtt
ttagaatacgttgtcaaagagcaccctgtgatgttgaacagggctccgaccttgcaccgt
cttgggattcaggcgttcttgccgattctcgtggaaggaaaggcgatcaaactccatcct
ctcgtctgtcacgcgttcaacgcagacttcgacggagaccagatggccatccacgttcct
ctgactccaaaagctcagttggaaacatggatgcttatgctttctcctcacaatattctg
aaccccgcaaacggacatccgatctgtggaccgactcaggatatcgtattaggaatttat
tatctaacttccgagcttccttcggagccgggagttcctttaaaatctttctcgaacctg
gacgaggttcactacgcgatcgacagaggcgtggttgaattcagaaccaagatcagcgtt
ttccatcaaggaaagattctcgagacaactccaggaagattgattttcaacaccattctt
ccggaaggttacgcatacgtaaacaaaccgctttccgataaggaaacaaaccggatcatc
gcggacgtttacgacaaatacggtcccgcaaaaaccgtattgatgctcgatgacattaaa
aaattaggttatcgttatgcgactttgttcgctcctaccatctcgatcgaagacattcgt
gtgtctccgggtaaagtgggtctcgtgggcgacgcaaacaaggaagtcgaaaaagcagac
tccgagtatcgcaaagggatcatcacaaacgaagaacgtcgtaaaaaggtaatcgagatc
tggacaaaaacgaacgatctcatcaccgaatccatgttcaaggaactggaaaaagacaag
ggcggattcaacccagtgttcatcatggcggcctccggtgcgagaggatcgaaacaacag
atccgtcagctcgcgggaatgcgtggtcttatggccaaaccttccggagaaattatcgag
ctggcgatccgttcgaacttccgcgaaggactttcggttcttgaattcttcatatcgaca
cacggtgcgagaaaaggtcttgcggataccgcgttaaaaaccgcggacgcaggttactta
actcgtcgtcttgtggatatttctcaggacgtaatcatctccgaagacgattgcggaacc
gaagaatccatttctctcggtatcgtaaaagaaggagagaacgtaatcgtctccttaaac
gaccgtgttttcggacgttataccgcagaagacgtgatcgatccagttaccgatcaagtt
gtatatcctagaaacactctgatcacaagagaagtcggtcagaaagtagaaaacctaggt
tacgacaagatccgagttcgttctcctctgacttgcgaatccaaacaaggtgtttgtatc
tgttgttacggtatggacatggcgagactcattcctgcggaaatcggagaagcggtggga
accatcgcggctcagtccatcggtcaacctggaactcagttgacgatgagaacgttccac
atcggtggcgctgcgtccgcaaaagttcaagagaaagaacacaaagtatcttatacggcg
atcgtaaacaatatcaatgggcgtttgatccgtaacgataaagatcataatatcttttct
cgtcgtggttcgattgtaatccaaagattgattcaacaatacaagatcgaagaactttcc
aacttacgcgttgaaaacggacagaaagtggacaagggagaattggtggctacttctccg
aacggagaaaacatcacttccgaaatgcctggaaccattcatatcgagaatggaatcttc
cgcatcttaggtgaagaagctgtgatccctgtaaaaaccggaaccgttgtaaacgtaaaa
gtaaacgacatcactcgcccgaaccaacctctcgcagagtttgacccttataacgaagtg
ggtatttctgaaatcgacggaaccgttcagtggatggatctggaaattggaaagaacgta
agaagagacgaggacgttaagacttccaacattcttttgaaagtaatcgaacaaagaaga
gaaaaactcaaccctagaatcacggtcatttccggaagctcgagagaagaatattccgtt
cctgtggacgcgattatttccgttcaagacggggacaaagtgaagggtggagatattctc
tttaaaattcctaccgttgccgaaaaaactcgggatattaccggcggtcttccaagggta
gacgagcttttcgaagcgagaagacctaaggacgcaacgactcttgctgaaacagacggt
aaaatcgagatcagcggagagatcgttaaagaaaaacgcgttctttatatccatccggac
aattctgatttagaaaaagtaaaagttacgattccgatcggtaaacagatccgagttcgt
aacggagactttgtcaagagaggagatcaaatcgacgacggtaatttagatcctcacgat
attctcagagtcaaaggtgtgactgctcttcaagtgtatcttgttcaagaagtccaagag
gtctatagactgcaaggggttcatatcaacgataaacacatcgaggttgtggttcgtcaa
atgctcagaaaagttttgattaccgattctggagatactagttttgtaaatcagcaacaa
atagacagacttgttttcaacgaagaaaataagagagtgatcgcggaaggtggttctccc
gcggaatcggttccgattcttcttggattgaccaaggcttctttaaatacggaatctttt
ttctcggcggcttcctttcaggaaacgaccaaggttcttaccgatgcggcaatcaaaggt
aaaactgataacctgatggggctcaaagagaacgtcattatcggtcatatgattcctgct
ggaaccggaacgaagaaatataaggatattgctgtattcaaatctgcttatggagattta
gaccgtcctttggaggaagaagaggaggaggaaattcctcaagcgatcgcggaagaatcc
gatgcggatgaataa
DBGET
integrated database retrieval system
