Lacinutrix neustonica: N7U66_05865
Help
Entry
N7U66_05865 CDS
T09391
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lnu
Lacinutrix neustonica
Pathway
lnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7U66_05865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lnu03019
]
N7U66_05865
03400 DNA repair and recombination proteins [BR:
lnu03400
]
N7U66_05865
Enzymes [BR:
lnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N7U66_05865
Messenger RNA biogenesis [BR:
lnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7U66_05865
DNA repair and recombination proteins [BR:
lnu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N7U66_05865
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Phage_rep_O
TrmB
DnaD_N
PF0610-like_N
HTH_24
Cas3-like_C_2
HTH_5
DUF4423
HTH_11
Motif
Other DBs
NCBI-ProteinID:
WAC03140
UniProt:
A0A9E8SHX4
LinkDB
All DBs
Position
1058876..1060777
Genome browser
AA seq
633 aa
AA seq
DB search
MKHPVDILERYWKFTSFKPLQETIIQSVLAGEDTFALLPTGGGKSLCFQIPALVKEGICI
VVSPLVALMKNQVQALQDKGIKAMALTSGISYSQLDTLLDNCIYGNYKFLYLSPERLQQD
IVQDRIRQMNVNLIAVDEAHCISQWGNDFRPSYKNITKLRELQPTVNVIALTASATPTVV
DDIIIELDFISPKVFKQSFFRPNLAYMVFHEEDKYFRLEAILKKNPAASIVYVRNRKATL
EVSRFLEGKGFTSTYYHGGLTNKEKDAALDNWMQNRTQIMVATNAFGMGIDKPDVKTVVH
LNLPESMESYFQEAGRAGRNGNKAFAVILKNNSDEILVKNQFLNVLPSVDFIKITYRKLS
SYFQIPYGEGVDDTFDFNFNEFCKIYKFNTLLAYNALLLLDRTSVITLSKQFNQRTIVQF
AVSNAALFNYLETHAESNTVVKAILRTYGGVFEQETKINTSLVAEKASVNENVVFAVLKQ
LEKGAIITLKNAKTDAQITYLQPREDDNTINRISTIIKQQNVLKEKQVHSILSYINNDTL
CKSLQLLSYFGEKEVTACGVCSVCLSRKPIKTIDPKIITRKIIEALETEHLSSRELFKRL
NFTETQINNTLKALLEQEIIKITHTNTYKLAHI
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaccctgtagacatattagaacggtattggaaattcacctcctttaaaccacta
caagaaacgattatccaatcggttttagctggagaagacacctttgctcttttacccact
ggcggtggtaaatccctgtgttttcaaattccagccttagtgaaagaaggcatttgcatt
gtcgtttcccctttagtggcacttatgaaaaaccaggtgcaggccttacaagataaaggc
ataaaggccatggctttaacgagtggtatttcatattcacagctagacactcttttagat
aattgcatttatgggaattataaatttttgtatttatctcccgaacgattgcaacaagat
attgttcaagaccgcatacgacagatgaatgttaatcttattgcagtagatgaagcccat
tgtattagccaatggggaaatgattttagaccaagctataaaaacattacaaagctacgc
gagttacaacctaccgtcaatgttattgctttaaccgcaagtgccacgccaacagtcgta
gatgacattattatcgaactcgattttattagtccaaaagtatttaaacagtcttttttt
cgaccgaatttagcctatatggtttttcatgaagaagataaatatttccgactcgaggcg
attttaaaaaaaaatccggccgcttcaattgtctatgttcgaaacagaaaagccacacta
gaagtgagtcggtttcttgaaggcaaaggcttcacttcgacgtattatcatggcggccta
accaacaaagaaaaggatgctgcactcgataactggatgcaaaacagaacgcaaatcatg
gtagcgactaatgcctttggaatgggaatagacaaaccggatgtaaaaacagtagtccat
ttaaacttaccggaaagtatggaaagctattttcaagaggctggccgtgcaggtagaaat
ggcaataaagcatttgctgttattctaaaaaataactccgatgaaattctagtgaaaaat
cagtttttaaatgtgctgcctagtgttgattttataaagatcacttacagaaaactaagc
agttatttccaaataccttacggagaaggtgttgatgacactttcgattttaactttaat
gaattctgtaaaatttataaattcaatacccttttagcctacaatgcgctactattactc
gacagaacaagtgtaattaccttatcaaaacaattcaaccaaagaaccatcgttcaattt
gcggtaagtaatgccgctctttttaattacctagagacacacgctgagagtaacacggtg
gtaaaagctattttaaggacctatggtggtgtttttgaacaggaaactaaaatcaacacc
tctttggtcgccgagaaagcctcagtgaatgaaaacgttgtttttgctgtgcttaaacaa
ttagagaaaggggcgatcattacacttaaaaatgcgaagaccgatgctcaaataacctat
ttacaaccgagagaagatgacaacaccattaatagaatttctactattataaaacagcag
aatgttttaaaagagaagcaagtgcattcgatcttaagctatataaataatgacaccctt
tgtaaaagtctacaactcctctcctattttggcgaaaaagaagtgactgcatgtggggtt
tgttctgtttgtctaagtaggaaacccataaaaaccatcgatcccaaaataattactaga
aaaatcattgaagccctagagaccgagcatttatcctcccgagagttatttaaacggctc
aactttactgaaacacaaataaataacacattaaaagcgttattagaacaagaaataata
aaaatcactcacacgaacacttacaaattagcacatatctaa
DBGET
integrated database retrieval system
