Paenilisteria newyorkensis: OTR81_02470
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Entry
OTR81_02470 CDS
T08875
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lnw
Paenilisteria newyorkensis
Pathway
lnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OTR81_02470 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lnw03021
]
OTR81_02470 (rho)
03019 Messenger RNA biogenesis [BR:
lnw03019
]
OTR81_02470 (rho)
Transcription machinery [BR:
lnw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OTR81_02470 (rho)
Messenger RNA biogenesis [BR:
lnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OTR81_02470 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
ATPase_2
OB_RNB
NACHT
AAA
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WAO22174
LinkDB
All DBs
Position
1936374..1937645
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AA seq
423 aa
AA seq
DB search
MPDISISYLEKLTIKEIYALAKEHKIPYYSKLTKRELSFALLKASAEKQGFFFMEGVLDI
IASEGFGFLRPINYSASSEDIYISASQIRRFDLRTGDKVSGKVRPPKENERYFGLLHVEA
VNGENPEVAKDRVHFPGLTPLYPDRQIRMEIGQEPISTRMIDMIAPIGFGQRGLIVAPPK
AGKTILLKEIANAITENSPDAELIVLLIDERPEEVTDIERSVKAEVVSSTFDEVPENHIK
VAELVLERAMRLVEQKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRAMAERRVFPAIDIR
RSGTRKEELLLPKENLEQLWKIRKIMPIQGDALDISERFIRYLKKTPTNADFFEVIQTEM
FKK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgccggacatatccatttcctatctggaaaaactgacaattaaagaaatttatgcgctt
gcaaaggaacataagattccctattatagcaagctcacgaaacgagaactcagctttgct
ctgctaaaggcaagtgctgaaaaacaaggcttcttcttcatggaaggcgttcttgatatt
attgcctcggaaggttttggcttcctgcgccccatcaactattccgcgagttccgaagac
atctacatatcagcttcccaaatcagacgttttgatctaagaacaggtgataaagtttca
ggaaaagtccgtcctccaaaagagaatgaacgctattttggcttgcttcacgtcgaggcg
gttaacggtgaaaatccagaagtcgcgaaagatcgtgtccattttcccggcctaacgccg
ctttatcctgatcgccaaatacgtatggagattggtcaagagccgatttcaacgcgtatg
attgacatgattgcgccgattggttttggtcaacgtggactcattgtagccccgcctaaa
gctggtaaaacgattcttttaaaagaaattgctaatgcgatcacagaaaatagtccagat
gcagaattgattgtactactaatcgatgaacgtccagaagaagtaaccgatattgaacgc
tccgtcaaagcagaggttgttagctcgacgtttgacgaagttccagagaatcacatcaaa
gttgcagaactcgtcttagaacgggcaatgcgccttgtagagcagaagcgtgacgttatt
attttgatggatagcattacgcgtttagccagagcctataatctcgttattccaccgagc
ggtcgaacgctgtcaggtggtatcgatccagccgcgttccacagaccgaagcgctttttc
ggggctgctcgaaatatcgaagaaggcggaagtttaacaatcttggcgacggcgcttgtt
gacaccggttcgcggatggacgacgttatctacgaagaattcaaaggaaccggaaacatg
gagcttcatctcgatcgcgcgatggcagaacgccgcgtcttcccagccattgatattcgc
cgctcaggaacgcgtaaagaagaactcctacttccaaaagaaaacctcgaacagctttgg
aaaatccgtaaaattatgccgattcaaggcgatgcactagacatttcagaacgctttatt
cgctatttgaaaaagacgccgacgaacgcagattttttcgaagttatccaaacagaaatg
tttaaaaaataa
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