Listeria newyorkensis: OTR81_03265
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Entry
OTR81_03265 CDS
T08875
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lnw
Listeria newyorkensis
Pathway
lnw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lnw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OTR81_03265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lnw03021
]
OTR81_03265 (rpoC)
03400 DNA repair and recombination proteins [BR:
lnw03400
]
OTR81_03265 (rpoC)
Enzymes [BR:
lnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OTR81_03265 (rpoC)
Transcription machinery [BR:
lnw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OTR81_03265 (rpoC)
DNA repair and recombination proteins [BR:
lnw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OTR81_03265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WAO22325
LinkDB
All DBs
Position
1773874..1777488
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVKNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
SCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVTEPGDTPLEKKQLLSEKEYRVYREKYSQSFQAGMGAEAIKKLLS
DIQLEKEVNGLKEELKSAQGQRRTRAIRRLEVLEAFRHSGNDPSWMVLDVLPVIPPEIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVGRGLAHNIKSAKRKIERSSPEIWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGTVGEGTVFTDINEAQLAYQNGYVHLHSRIAVV
AGSIDNERFTDEQRKQLLITTVGKLIFNTILPTTFPYINEPTDYNLEVETPKKYFVDTNV
DVKKHIQEQEIVDPFKKKILGNIIAEVFKKFHITETSRMLDRMKDLGFKISTKAGMTVGI
ADILTLEEKHDILEEAHDKVEKITKTFRRGLITDDERYERVIAVWNEAKDVIQGKLILSL
DRLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIVELPITSNFREGLTVLEYFIST
HGARKGLTDTALKTADSGYLTRRLVDVAQDVIIREYDCGTDRGLEIEAIREGTEIIEPLE
ERLEGRYARKSIRHPETGEVIVAENDLITEAKSRLVIEAGIEKVTIRSAFTCNTRHGVCK
KCYGKNLATGTEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAIITEVEGEVVSIEEARDRQQEIVIQGKDEDRRSYSIPYTARLRVKIGDIVD
RGEALTEGSIDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIR
VMDTGDTNILPGTLMDVHTFTESNRDALLAGKQPATGRPVLLGITKASLETDSFLSAASF
QETTRVLTDAAIKGKTDELLGLKENVILGKLIPAGTGIHHYRKLKSSVLGKEQEVAELEE
SKHI
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
gtgttagatgtgaaaaattttgagtatatgaaaataggtcttgcgtctccagataaaatt
cgttcatggtcacacggagaagttaaaaaaccagaaacaatcaactaccgtacgctgaaa
cctgagcgcgatggtttgttctgtgaaagaatcttcggaccaatgaaagactgggaatgt
tcttgtgggaaatacaaacgtgttcgctataaaggcgtagtttgtgaccgttgtggcgtt
gaagttacgaagtccaaagttcgtcgtgaacgtatgggacacattgaacttgctgcacca
gtaacacatatttggtattttaaaggtattccaagccgtatgggacttgcacttgacatg
tcaccgcgtgcgttggaagaagtcatctattttgcttcctatgttgtaacagaaccaggc
gatacaccgcttgaaaagaaacagttgctttcagaaaaagaataccgcgtttaccgtgag
aaatatagccaatcgttccaagcaggaatgggcgctgaagcaatcaaaaaacttctctca
gacatccaacttgaaaaagaagtaaatggcttgaaagaagaattgaaatcggcgcaagga
caacgtagaactcgtgcgattcgtcgtttagaagttctagaagcgttccgtcattccggc
aatgatccaagttggatggtgcttgacgtgcttccagttatcccgccagaaatccgccca
atggttcaacttgaaggtggacgttttgcgacaagtgatttgaatgacctttatcgccgt
gttattaaccggaataaccgtctgaaacgcttgcttgatttaggtgcgcctaacatcatc
gtgcaaaatgaaaaacggatgctccaagaagcagtcgatgctttgattgataatggtcgt
cgtggccgtccagtaacaggaccaggtaaccgtccacttaaatcactgtctcacatgcta
aaaggtaaacaaggtcgtttccgtcaaaacttactaggtaaacgtgtcgattattctggt
cgttccgttatcgtcgtaggtccgaaccttaaaatgtaccaatgtggacttccaaaagaa
atggcactcgaactattcaagcctttcgttatgaaagaattggttggtcgtggccttgcg
cataacattaagagtgcaaaacgcaaaatcgaacgctcttcacctgaaatttgggatgta
ttagaagaagttattcgtgagcatccagtacttcttaaccgcgcacctactcttcataga
ctaggtatccaagctttcgaaccaacacttgttgaaggccgtgcgattcgtctgcatccg
ctagtatgtacagcttataacgccgattttgatggtgaccaaatggctgtccatgttcca
ctatctgcagaagcacaagcagaagcgcgtattttgatgcttgcagcccaaaacattttg
aacccgaaagatggtaaaccggttgtaacaccttctcaagatatggtactcggtaactac
tacttgacgcttgaacgtgaaggtacagttggtgaaggtacggtatttacggatattaac
gaagcacaattagcataccaaaacggttatgttcatttgcattcgcgtatcgccgttgtt
gcaggctcgattgacaacgaaagatttaccgacgaacaacgcaaacaactattaattacg
actgttggtaaactgattttcaataccattttgccgacgaccttcccatatattaacgaa
ccgacagattacaatctggaagtggaaacgcctaagaaatatttcgtggatacaaacgtt
gacgtaaagaaacacattcaagaacaagaaatcgttgacccattcaagaaaaaaatccta
ggaaacatcatcgcagaagtattcaaaaagttccatatcacagaaacgtctcgcatgctc
gatcgcatgaaagatctaggtttcaaaatctctacaaaagccggtatgacagttggtatc
gcggacatcttgacgcttgaagaaaagcatgacattcttgaagaagcgcatgataaagta
gagaaaatcaccaaaacattccgtcgtggtttgattaccgatgacgaaagatatgaacgt
gttattgctgtctggaatgaagcgaaagacgttatccaaggcaaactgatcttgagtttg
gatcgcttaaacccgatcttcatgatgcaagattccggagctcgtggtaacatctccaac
tttacacagctagcaggtatgcgtggtctgatggccgatccatctggacgtatcgtagaa
cttccaatcacatcgaatttccgtgaaggactaactgtcttggaatacttcatctcgacc
catggtgcgcgtaaaggtcttaccgatacagcccttaaaacagccgattcaggttacctt
actcgtcgtttggttgacgtggcgcaagatgttatcattcgtgaatatgattgtggcact
gaccgcggtcttgaaattgaagctatccgtgagggtactgaaattatcgagccgttggaa
gagcgtttggaaggtcgttatgcacgtaaatcaatcagacatccagaaacaggcgaagtt
atcgtcgctgaaaatgacttgatcacagaggctaagtctcgtcttgttattgaagctggc
attgaaaaagtaaccatccgttctgcattcacatgtaatacaagacatggtgtatgtaag
aaatgttatggtaaaaacttggcaacaggaacagaagtcgaagtcggagaagccgttggt
attatcgccgcgcaatctatcggggaaccaggtacacagcttacaatgcgtacgttccat
acaggtggggtagccggagacgatatcacgcaaggtcttccacgtatccaagagattttt
gaagcacgtaaccctaaaggtcaagcgattattaccgaggtggaaggtgaagttgtttct
attgaagaggcacgcgatcgccaacaagaaatcgtgatacaaggtaaagatgaagaccgt
cgtagctacagtattccttatactgcacgccttcgagttaaaatcggagacattgtggac
cgtggggaagcactgactgaaggttcgatcgatccgaaagcattgatccgcgttcgtgac
gtcctttccgtacaagaatatctacttgccgaggtacaaaaagtttaccggatgcaaggg
gttgaaatcggcgataaacacgtggaagttatggttcgtcaaatgttacgtaaaatccgc
gtaatggacactggtgatacaaacatcttgccaggaacattaatggatgtacacacattt
accgagtctaaccgtgacgcattacttgccggcaaacagccagcaactggacgcccagtc
ttgctaggtattacaaaagcatcccttgaaacagattccttcttgtccgcagcatccttc
caagaaacaacccgtgttcttacagatgcagcaatcaaaggtaagactgatgaattgctc
ggcttgaaagaaaatgttatcctaggaaaactgatcccagccggtaccggtatccaccat
taccgcaaactgaaatcatccgtactaggaaaagaacaagaagtagcagaattagaagaa
tcgaaacatatttaa
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integrated database retrieval system
