Listeria newyorkensis: OTR81_03660
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Entry
OTR81_03660 CDS
T08875
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lnw
Listeria newyorkensis
Brite
KEGG Orthology (KO) [BR:
lnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lnw03016
]
OTR81_03660
Enzymes [BR:
lnw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OTR81_03660
Transfer RNA biogenesis [BR:
lnw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OTR81_03660
Prokaryotic type
tRNA splicing ligases
OTR81_03660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WAO22384
LinkDB
All DBs
Position
complement(1694317..1695534)
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AA seq
405 aa
AA seq
DB search
MFTYYEKNETSKPIKIWLSDQSAIEDGCFEQAKQIANLPFVYKWLSLMPDTHLGAGMPIG
GVLATKNTIVPYAVGMDIGCGMCYIQTDIHESELTKNFIQSVVNETLFTVPVGKARHREP
QKSAVIDMAFAQKDHYELLPNAAELLENAYYQVGTLGGGNHFIEFQKDENGYLGIMLHSG
SRHLGAQICQHFQKLAVKRNQQWLSDTPERNPLAFLPTDSQEGKAYIEWMNLALDYAFEN
REAMLSATMTIFAKHSKKKLSKTPEFTDKINCHHNYASLENHYGKNVWVHRKGATRARTG
ELGIIPGAMGATSYLVRGLGNPESFHSSSHGAGRNFSRTHAKSNFPMEEVLQDLNEHNIA
IGKKNLQDVAEESRFAYKNIDEVMHNQTDLVETIKTLTTLGVVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtttacttactacgaaaaaaatgaaacctcgaaaccaatcaaaatctggctttccgac
caatcagcaatcgaagacgggtgcttcgagcaagcaaaacaaatcgcgaacctgccattc
gtctataaatggctgtccctcatgcctgacacccatctcggcgcaggcatgccaattggc
ggcgttctcgccacgaaaaacacgatcgtcccgtacgcagtcggcatggacatcggatgc
ggcatgtgttatatccaaaccgacatccacgaaagcgaactcaccaagaacttcatccaa
agcgtcgtaaacgaaaccctgttcaccgttcccgtcggcaaagcccgtcaccgcgaaccc
caaaaatccgccgtcatcgatatggcgttcgcacaaaaagaccattacgaactcctgcca
aacgcggcggaactactcgaaaacgcctactatcaagtcggtacactcggcggcggcaac
catttcatcgagttccaaaaagacgaaaacggctatctcggcatcatgctccactctgga
agccgccatctcggcgctcaaatttgccaacactttcaaaaactcgccgtcaagcgcaac
cagcaatggctcagcgacacacccgaacgcaacccgctcgccttcctaccaaccgattca
caagaaggaaaggcctacatcgaatggatgaatctcgcgctcgactacgcattcgaaaac
cgcgaagccatgcttagcgccacgatgacaatttttgcgaaacacagcaagaaaaagctc
agcaaaacacccgaattcaccgacaaaatcaactgccaccacaactacgcatcactcgaa
aaccactacggcaaaaacgtctgggttcaccgtaaaggcgccacacgagcaagaaccggc
gaactcggcatcattccaggcgcgatgggcgcaacaagctatctcgttcgcggcctcggt
aatcccgaaagcttccactcctcctcgcacggcgccggacgaaacttttccagaacccac
gccaaaagcaattttccgatggaggaagtactacaagacctaaacgaacataacatcgca
atcggcaagaaaaacctccaagacgtagccgaagaaagccgtttcgcctacaaaaatatc
gatgaagtcatgcataaccaaaccgatcttgtcgaaaccattaaaacactcacaacttta
ggcgtcgttaaaggctaa
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