Listeria newyorkensis: OTR81_07300
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Entry
OTR81_07300 CDS
T08875
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lnw
Listeria newyorkensis
Pathway
lnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OTR81_07300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lnw03019
]
OTR81_07300
03009 Ribosome biogenesis [BR:
lnw03009
]
OTR81_07300
Enzymes [BR:
lnw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OTR81_07300
Messenger RNA biogenesis [BR:
lnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OTR81_07300
Ribosome biogenesis [BR:
lnw03009
]
Prokaryotic type
rRNA helicases
OTR81_07300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Helicase_RecD
HEM4
AAA_22
3-dmu-9_3-mt
Motif
Other DBs
NCBI-ProteinID:
WAO23066
LinkDB
All DBs
Position
complement(853216..854646)
Genome browser
AA seq
476 aa
AA seq
DB search
MKFDNIGSDIEKALAGLGYTEATEVQREVVPLVLEEKDVVVKAQTGSGKTASFAIPICEL
VEWGENKPQALVLEPTRELAAQVQEYFTNIGRFKRIKATAIFGKSPFAKQKLELKQKSHV
VVGTPGRTLDHIEKGTLSLEKVRYLVIDEADEMLNMGFIEQVEAIIQALPKERVTMLFSA
TLPADIAMLSDKYMKAPKHVEIAATGLTTADITHEKVTVKDDRKMVALRDTLIVQNPESA
IIFCRTQERVDDTYDQLRRMGYPAEKIHGGLTQEDRFGVMNDFKRGMFRFLVATDVAARG
IDIENITLVVNYDVPLEKESYVHRTGRTGRAGRSGKAITFVTPFENRFIGEIEEYIGFEI
PQVDLPNEAIVAARKPAFDEKMEEAPVVKKDKSAALSKDIMKIYFNGGKKKKLRAVDFVG
TIAKLDGVSADDIGIITIEDNVSFVEILNGKGAQVVKAMQTVTVKGKKLKVSKARR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgataatataggttcggatattgagaaggcgcttgctgggttagggtatacg
gaggcgacggaggtgcagcgcgaggttgtgccgcttgttttggaggagaaggatgttgtc
gtgaaggcgcagactgggagtgggaagactgcttcgtttgcgattccgatttgtgagctc
gtggagtggggcgagaataaaccgcaggcgctggtcttggaaccgacgcgggaattggcg
gcgcaggttcaggaatattttactaatattggtcgttttaaacgtatcaaggcgacggcg
atttttgggaagtctccttttgcgaaacagaaattggaattgaagcagaagagccatgtt
gttgttgggacgcctggccggacgctggatcatattgaaaaaggaacgctgagcttggag
aaggtgcgctatttggtcatcgatgaggcggacgagatgctgaacatgggctttattgag
caggttgaggcgattattcaagctttgccaaaggagcgcgtgacgatgcttttctcggcg
actttgcccgcggatatcgcgatgttgagcgacaagtatatgaaggcaccgaagcacgtc
gaaatcgctgccactggcctgacgacggcggatattacgcatgaaaaagtgacggtgaag
gatgatcgcaaaatggtcgcgttacgcgatacgttgattgtgcagaatccggaaagcgcg
attattttttgtcggacgcaagagcgcgtggatgacacgtatgaccagctgcgccgcatg
ggttatcctgctgagaagattcacggtggtttgacgcaagaagatcgttttggcgtgatg
aacgattttaaacgcggcatgtttcgctttttagtggcaacagacgtggcggcgcgcggg
atcgatatcgagaacataacgcttgtggtgaattacgacgtgccacttgaaaaagagagc
tatgtacatcggactggtcggacggggcgcgctggacgaagcgggaaggccattactttt
gtgacgccgtttgagaatcgttttatcggtgaaatcgaggagtacattggctttgaaatt
ccgcaagttgatctgccaaatgaggcgattgtggcggcgcgaaaaccagcttttgacgag
aaaatggaagaagcaccagtcgtgaagaaggacaagagcgcggcgctgagtaaagatatt
atgaagatttattttaacggcggcaaaaagaagaagctacgcgcggtggatttcgtcggg
acaatcgcgaaattggacggcgttagcgcggatgatatcgggattatcacgattgaggat
aacgtgtcgtttgtggaaattctgaacggaaaaggcgcgcaagtcgtgaaggcgatgcaa
accgttacggtaaaaggaaagaaattgaaagtaagcaaagcacggagataa
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