Listeria newyorkensis: OTR81_08355
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Entry
OTR81_08355 CDS
T08875
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lnw
Listeria newyorkensis
Brite
KEGG Orthology (KO) [BR:
lnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lnw03400
]
OTR81_08355 (addB)
Enzymes [BR:
lnw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OTR81_08355 (addB)
DNA repair and recombination proteins [BR:
lnw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OTR81_08355 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WAO20325
LinkDB
All DBs
Position
complement(652850..656326)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSLQFIIGRAGTGKTVLIMDRLEERMSGAGEKRNCIFLVPDQMTLQIETAFFERESVSGL
LHTQIFSFSRLAWRILQESGGLARTFLTDSGLEMVIRKIMIEKQDELQLFGRNASKKGFI
KELEQIFKEMKQFCVEQEELQNFDGENSADLNNKMADIALLYDAYKRVLSGKYLENEDYL
RLLGDAISDSNFLAECEIFIDGFHEFSPQEYLVLGELFSVCKNVTIALTLDEAYSVNNLQ
AYNVFQVTGMTYANLKEIAQNGACEILPDIVLENNERFKNNDLAYLQETWGEFSVKAYAN
ETPSLAIYEANNRRAEMDGIARHIRQLASEGYRYRDMAILLRNTEVYETILKASLNANDI
PYFIDKKRTMANHPMVEFLRSSLDVLRTNWQYEAVFQAVRTEFFFPLDVSSSAYRGKVDI
FENYILENGIYNKRRWMDKRPWSYRKIRGLDLNQGVQTDDEKAKEATINEVREHIKVPLM
ALEKRLEVAGNGVEQASALFQFMLDVQVDGRLDMWRKHAEEMNELELAKEHEQAWKSVVA
LLDEFVEVMGDEELSLNTFFDIINTGLDALDFALLPPSLDQVIVADIDNSRLLNKKVIFA
AGINDGVLPMKKEESGILSDEDRNVLNQSGIAVRPSSKNMLSSEEFVAYRLFTLPSERLF
ISFPNADENGKELSESSYIRRIETIFPEVKRELYLSDPSLLSDLEQASYISTPRATIALL
TAQMQYKKKGYQMSPVWWDAYAFFQSDEEWRNPALRILGSLFYQNKAKNISEEAATSLFG
ENIHASVSRMERFYSCHFQHFAQHGLKLEERAHYKLQSVDIGEIFHGAMEWISAELQKNN
LEWGQLSVEQCMELATLAMAYLAPKLQHEILLSTKRLEYIQYKLLNIIIRATRVLNEQAK
ISRFKPVGLEVDFGAKGEIPPMKLPLNDGRELILQGRIDRIDEAEQDERTFLRIIDYKSS
SHDLPMTEVYYGLALQMLTYLDIVVENSAKLIGKVAEPAGVLYFHMHNPLVSADKELTET
ELEKELLKSFRMKGLVLDDTLAVSLMDTELEAGKTSSVIPTGLKKDGNFNAHSATATRAE
FDTMRQYVRRQYTKAGNKIIDGEVTINPYKLKERTPCQLCVFRSVCQFDASLENNQYRKL
ENQSREDVLRKMREEGQE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagtctacaatttattatagggcgcgcgggtactgggaaaacggtactaataatggac
cggttagaagagcgaatgagtggagcgggagagaagcggaattgtattttcttagtccca
gatcagatgactttgcaaatcgagacggcgttttttgaacgggagagtgtctctgggtta
ttacacacgcaaatttttagttttagtcgtttggcttggcggattttgcaagagagtggt
ggcttggctcgaacatttttaacggattcaggattagagatggtcattcgtaaaataatg
attgagaagcaagatgagttacagttatttgggcggaatgcttcaaaaaaaggtttcatt
aaagagttggagcaaatttttaaagagatgaagcaattttgtgtggagcaagaagagtta
cagaattttgatggtgagaatagtgcagatttgaataataagatggctgatatagcgcta
ctttatgatgcttataagcgtgtattgtctgggaaatatttagagaatgaagattatttg
agactgcttggagatgcgatttcggatagcaattttttagcggaatgcgagatttttatt
gatggttttcatgagttttcgccacaagaatatttggtcttgggggaattatttagtgtt
tgtaaaaatgtgaccatcgctttgactttggatgaagcatatagtgtgaataatttacag
gcgtataatgtatttcaagtgacaggtatgacatatgccaatttaaaagaaatagctcag
aatggggcttgtgaaatattacctgatatcgttttagaaaataatgaacgctttaaaaat
aatgatttagcatatttacaggagacatggggggagttctccgtgaaggcctatgcgaat
gagacgccaagtcttgctatttatgaagcgaataatcgacgtgctgaaatggatgggatt
gcgaggcatataaggcagttagcttcggaggggtatcgttaccgggatatggctattttg
ctccgaaatacagaggtgtatgagacgattttgaaggcttctttaaatgcgaatgatatt
ccttattttatcgataagaaacgaacgatggctaatcacccaatggttgaatttcttcgt
tctagtttagatgttcttcgtactaattggcagtatgaagctgtatttcaggctgttcga
acggaatttttctttccgctagatgtaagtagtagtgcttatagaggaaaggtcgatatt
tttgagaattatatactggagaatggaatttataataaacgtagatggatggataaacga
ccttggagttaccggaaaattcgtggattggatttgaatcaaggcgtacaaacagacgat
gagaaggcgaaagaggctacgattaatgaagtaagggagcacataaaagtaccgttaatg
gcgctagagaagcggttagaggtagctggtaatggtgtggaacaggcaagtgcacttttt
caatttatgttggatgtgcaagttgatggtcggctagatatgtggcgcaagcatgcggag
gaaatgaatgaattagagttggcaaaagagcatgaacaggcctggaagtctgttgtggcg
ttattagatgagtttgtagaggttatgggagatgaggagctatctcttaatactttcttt
gatattattaatacagggcttgatgctctcgattttgctttgttaccgccgtcattagat
caggttattgttgcggatatagataattcgagattactaaataagaaggttatttttgct
gcagggattaatgatggtgttttgccaatgaaaaaagaggagagtggcattttatcggat
gaagatcggaatgttttaaatcagtcgggaattgctgttagacctagtagtaagaatatg
ctctcaagcgaagaatttgtggcttatcggctgtttacgctgccctcagagcgtttattt
attagctttcctaacgcagatgagaatgggaaggaattgtctgaatcaagctatattagg
agaatagagacaatttttccagaggtgaagagagagctttatttgagtgatccttctttg
ttgagtgatttggagcaggcttcttatatttccacaccaagagctacgatagcgctttta
acagcgcaaatgcaatataagaaaaaagggtaccagatgtctcctgtatggtgggatgct
tatgcctttttccaatcagatgaggagtggagaaatcctgctttacgaattttaggaagt
ttattttatcaaaataaggctaagaacatttcagaagaagctgcaacctccttgtttggt
gaaaatattcatgcaagtgtttcgagaatggagcgtttttatagttgtcactttcagcat
tttgcgcaacatggtctaaaactggaggagcgggcgcattataaactgcaatctgtggat
attggtgagatatttcatggggctatggagtggatatcggcagagcttcaaaagaataac
ttagagtggggtcaattatctgtggagcaatgcatggagctggcaacgcttgctatggcg
tatttggcgccaaagttacaacatgaaattttgctcagtacgaagcgattggaatatatt
cagtataagcttttgaatatcattattagggcgacgcgtgtgttgaatgagcaagctaaa
attagtcggtttaagccggttggactagaagttgatttcggagcgaagggggaaatacca
cctatgaaattgccgcttaatgatgggcgtgaactcattttacaggggcgcattgataga
attgatgaggcggagcaggatgagcgcacttttttgagaattatagattataagtcaagc
tcgcatgatttgccgatgacggaagtttattatggacttgccttgcagatgctgacctat
ttagatattgtcgtggagaattcggctaaacttattggaaaagtggctgagcctgcggga
gttttatactttcatatgcataatccgcttgttagtgcagacaaggaattgacggaaaca
gagcttgagaaagaattgttgaagagttttcggatgaaagggttagtgctggacgatact
ttggcggtatcgcttatggatacggaactagaggcagggaaaacgtcttctgtgatacct
actgggttgaaaaaggatgggaattttaatgcgcattcggctacagcgacgagggcagag
tttgatacgatgcgccagtacgttcgtcgccagtatacaaaggcagggaataagattatt
gatggggaagtaacgattaatccttataaattgaaggagcggacgccttgtcaactctgt
gtatttcgatcggtttgtcagtttgatgcgtcgcttgagaataatcaatatcgtaaatta
gagaatcagagtagggaagatgttttgaggaaaatgcgtgaggaggggcaggaatga
DBGET
integrated database retrieval system
