Listeria newyorkensis: OTR81_11855
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Entry
OTR81_11855 CDS
T08875
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lnw
Listeria newyorkensis
Pathway
lnw03030
DNA replication
lnw03410
Base excision repair
lnw03420
Nucleotide excision repair
lnw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lnw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OTR81_11855 (polA)
03410 Base excision repair
OTR81_11855 (polA)
03420 Nucleotide excision repair
OTR81_11855 (polA)
03440 Homologous recombination
OTR81_11855 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lnw03032
]
OTR81_11855 (polA)
03400 DNA repair and recombination proteins [BR:
lnw03400
]
OTR81_11855 (polA)
Enzymes [BR:
lnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OTR81_11855 (polA)
DNA replication proteins [BR:
lnw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OTR81_11855 (polA)
DNA repair and recombination proteins [BR:
lnw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
OTR81_11855 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OTR81_11855 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
DNA_pol_A_exo1
HHH_2
Enkurin
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
WAO20950
LinkDB
All DBs
Position
complement(3278338..3280965)
Genome browser
AA seq
875 aa
AA seq
DB search
MNKLVLIDGNSIANRAFYALPLLSNDKGVYTNAVYGFAMMIMNVLEKEQPDHVLVAFDAG
KTTFRHSQYKEYKGGRQKTPSELSEQFPFIRELLDAYSIPRYELPNYEADDIIGTITKHA
EKDGLEVVVITGDRDLTQLASDKTTVYITKKGITDMEQNTPASLKEKYDLMPEQIIDMKG
LMGDASDNIPGIPGVGEKTALKLLHQFGTVEEVLANADQISGKKLQEKVMDNKESAVMSK
ELATINTDSPLEIKVADLKYTGYDTEKVVPLLKELGFATLLKNIQGESSEPEKEMESLSF
EIVDEITAEHLSDKTAIYVELDNDNYHTAPFIGIAFHSEAGTFFANADALTKSPALKTWL
EDPKKEKVVYDAKKTIVGLSKFDIAVDGIEFDIMLASYLLNPSDTIGDFASVAVSHDFDA
VKTDELVYGKGAKRAIPEEAIVAEHLARKVVAVSELEKKMRTELENNEQLGLFEDLELPL
SKVLAKIEMYGVKVDTARLEDMKVELAGRLSELEKTIHEYAGSEFNINSPKQLGVILFEN
LGLPAEKKTKTGYSTSADVLEKLAGSHPIIESILMYRQLGKLQSTYIEGLLKVTHQDTQK
VYTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSEPGWKIFSADYSQVELRV
LAHISEDENLQYAFKHDYDIHTKTAMDVFHVEQEEVDSLMRRQAKAVNFGIVYGISDYGL
SQNLGITRKEARDFIDRYFASYPGVKEYMEEIVRSAKEKGYVETILHRRRYIPEITSRNF
NVRGFAERTAMNTPIQGSAADIIKKAMILMNDRLISEKLEARLLLQVHDELIFEAPESEI
AKLEEIVPDVMENAVALSVPLKVDSSFGDTWYDAK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaacttgtactaattgatggaaatagtatcgcgaatcgtgctttttacgcgttg
ccgcttttgagcaatgataagggcgtgtacacgaacgcggtgtatggttttgcgatgatg
attatgaatgtgttggaaaaagagcagccggaccatgtgttggtggcttttgatgcgggg
aaaacgacttttcggcatagtcagtataaagagtacaaaggtggacgccagaagacgcca
agtgagctgtctgagcagtttccgtttattcgcgagttgctggatgcgtattcgattccg
cgctatgaactgccgaattatgaggcggatgacattattggaacgattacgaaacacgct
gaaaaagacgggctagaggtcgttgtgattacgggggatcgcgatttaacgcagctcgcg
agcgataaaacaacggtgtatattacgaaaaaaggcatcacggatatggagcaaaataca
ccggcgagtttgaaagaaaaatatgatcttatgccggagcaaatcattgatatgaaaggc
ttaatgggcgatgcttccgataatattcctggaattcctggcgtcggcgagaaaacggca
ttaaaattactacatcaatttggcacggtagaagaagtactagccaatgccgatcaaatt
tcgggtaaaaagctacaagaaaaagtaatggataataaagaatcagccgtaatgagtaaa
gaattggcgacaatcaacacggattcgccactagaaattaaagtcgcggatctgaaatat
actggctacgatacggaaaaagtggtgccgttactgaaagaacttggttttgcgacactt
ttgaaaaatatacagggggaatcgagcgaaccggagaaagaaatggagagcctctcgttt
gaaatagtagatgagattacggcggaacatctgagcgacaaaaccgcgatttatgtcgaa
ttggataatgacaactaccatacggcaccgtttattgggattgcgtttcattcggaagcg
ggtacatttttcgcaaatgcggatgcgctcacaaagtctccagcattgaaaacgtggctg
gaagatccgaaaaaagaaaaagtcgtatacgatgcgaagaaaacgattgtcgggctttcc
aaatttgatattgcggtcgacggtatcgaattcgatattatgctcgcttcttatttactc
aacccatccgacacgattggtgattttgcgagtgttgcagtgagtcacgatttcgacgcg
gtgaaaacggatgaattggtgtacggaaaaggggcaaaacgcgcgattccagaagaagcc
attgttgcggaacatctggcgcgtaaagttgtcgccgtttccgaattagagaaaaaaatg
cgtacggaactcgaaaataatgagcagttaggcttatttgaagacctcgaattaccgcta
tccaaggttttagcgaaaatagaaatgtacggcgtcaaagtggacacggcgcgtctagaa
gatatgaaagttgagttggcaggccgattaagcgaactcgaaaaaacgattcatgagtat
gcaggatctgaattcaacatcaattcgccgaaacaattaggcgttatcctgttcgaaaat
ctagggctcccagcagaaaagaaaacgaaaacaggctattccacatccgccgacgtcctt
gaaaaactggcaggatcgcatccaatcattgaaagcatcctgatgtaccgtcaacttggc
aaactccaatcaacctacatcgaaggcttgctaaaagtgacacatcaagatacgcaaaaa
gtatacacgcgttttaaccagacattggcgcaaacaggccgtttgagctctgttgacccg
aacctgcaaaatatcccgattcgtttggaagaaggccgcaaaattcgtcaagtctttgtc
ccatctgaaccaggttggaagattttttctgcggattactcacaagtcgaactacgcgtt
ttggcgcatatttcagaagatgagaacctacaatacgccttcaaacacgactatgatatc
catacaaaaactgcgatggacgttttccacgtggagcaggaagaagtcgattcgttgatg
cgccgccaagcaaaagccgtcaattttggtatcgtatatggcattagtgattacggttta
tcgcagaatctaggtattacgcggaaagaagcacgggattttatcgatcgttattttgcg
agttatcctggcgtaaaagagtacatggaagaaattgtgcgttctgcgaaggaaaaaggc
tatgttgaaacgattttgcatcgtcgccgttatattcctgaaatcacgagtcgcaacttc
aacgttcgtggatttgccgaaagaaccgcgatgaatacaccgattcaaggaagtgccgcg
gatattatcaaaaaagcgatgattctcatgaatgaccgtcttatctcggagaaactcgaa
gcacgtttgctactccaagtgcacgatgagctcatttttgaagcaccagaaagcgaaatc
gcgaaactcgaagaaatcgttcccgatgtgatggagaatgccgtcgcgctttctgtccca
ctcaaagtcgatagttctttcggagacacgtggtacgacgcgaaataa
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