Loa loa (eye worm): LOAG_03249
Help
Entry
LOAG_03249 CDS
T02664
Name
(RefSeq) nonsense mRNA reducing factor 1 NORF1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
loa
Loa loa (eye worm)
Pathway
loa03013
Nucleocytoplasmic transport
loa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
loa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
LOAG_03249
03015 mRNA surveillance pathway
LOAG_03249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loa03019
]
LOAG_03249
Enzymes [BR:
loa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LOAG_03249
5.6.2.5 RNA 5'-3' helicase
LOAG_03249
Messenger RNA biogenesis [BR:
loa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
LOAG_03249
mRNA cycle factors
Common to processing body (P body) and stress granule
LOAG_03249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
AAA_16
UvrD-helicase
NPHP3_N
SLFN-g3_helicase
NAT10_TcmA_helicase
AAA_22
nSTAND3
ATPase
SRP54
PhoH
UvrD_C_2
PRA-PH
Herpes_ori_bp
nSTAND_NTPase5
AAA_10
Motif
Other DBs
NCBI-GeneID:
9940636
NCBI-ProteinID:
XP_020303371
UniProt:
A0A1I7W084
LinkDB
All DBs
AA seq
1059 aa
AA seq
DB search
MVDALEDEYGTPSLSLNFVDTPDGDSSLLHGATQDSQFEFDQQFTLPSQGWTGTLPEVGA
DQSQELVFVDEEEVPVPGQLPAHACRYCGIHDPATVAMCIICQKWFCNGRGSTSAGHIVI
HLVRSQHKEVSLHKEGALGETVLECYQCGSKNIFMLGYIPAKADTVVVVLCRSPCANQAV
LKDHSWQVDEWKPLISDRQLLSWLVKIPSEQEQLRARQISAVQINRLEELWKEDPKAVFE
DLERPGMDEEPERVQLKYEDAYQYKRVFEPLVKAEADYDRREKESQTQSVGHVRWDVGLN
RKPQAFFQLPKFSEGSMKLMLGDELRLKHSQTAGGEWSSIGCVIKIPDNHNDEVGIEMRL
KAENVPTDTRTNFTCEFVWNSTSFDRMQAALSLLGQDEDCVSQFIYHKLMGHDIDDIIFK
VSLPKRFSVPGLPELNHSQVHAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLVKQTNGQ
VLVCAPSNIAVDQLAEKIHRTGLKVVRLCAKSRETLDSPVAFLALHNQLKALHGAAELHK
LQQLKEEIGELADADERRFRALRIAKECQLLAAADVICCTCVSAADSRLSHMRIKCVLID
ESTQATEPEVMVAVVCGVRQLVLVGDHCQLGPVIMCKKAAKAGLSQSLFERLVLLGNRPI
RLQVQYRMHPALSSFPSNVFYEGSLQNGVTEGERQLIGIDWQWPVPDKPMMFWSCYGQEE
LSSSGTSFLNRTEAANVEKLATRFLKAGIKPEQIGIITPYEGQRSYIVQFMQTQGALHSK
LYLEMEVANVDAFQGREKDIIIVTCVRSNDHQGIGFLNDSRRLNVALTRAKFGLIIVGNA
KVLSRHPLWNYLLSVFKEKGCLVEGPLNNLKPSPITLSKPRRVPHVMNMNRFIPRGAVLA
KDIQGSAFGTRSRDLRTIQDPFAAITHDQLRPQNGINIPVPIQMFVQPPPHYYRPPPNPR
YGDLNSATGSTARNRKHLETLNMFSSQQSQDPIYMQQIGEMSGISQDTSDWTQSQTQHGA
SQGGISSSQDQLLVSQMESLFLSQDANTENYNFGDVSQY
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggtggatgctttggaagatgaatatggcactccatctttgtcactgaattttgtggat
acaccggatggcgattcttccttacttcacggagctacccaggattcacagtttgaattt
gaccagcaatttacacttccttcacagggttggactggcactctccctgaagttggtgct
gatcaatcacaggaattagtattcgtagatgaggaagaagttcccgtcccaggacaacta
ccagcacatgcatgcagatattgcgggatacatgatccggctacagtggcaatgtgcata
atttgtcagaagtggttttgtaatggacgtggaagtacttctgccggtcatatagttata
catttggtgcgttcgcagcacaaagaagtttccttgcacaaagagggtgcacttggtgaa
acagtactggagtgttaccagtgtggttcgaaaaacatttttatgctgggctatattcct
gcaaaagcagacacggttgtcgtggtgctttgccgctcaccttgtgcaaatcaagctgtt
ttaaaggatcactcctggcaggtggatgagtggaaacccttaatcagcgatcgacagttg
ctatcttggcttgtaaagataccatctgagcaggaacaactgagagctcgtcagataagt
gctgtccaaatcaatcgacttgaagaactttggaaggaagatcccaaagctgtgtttgaa
gatctggaaaggccgggaatggatgaggaaccagaacgtgtgcagctgaaatacgaagat
gcatatcagtataagcgtgtatttgagccgttggtaaaagctgaggcggactatgaccga
cgggaaaaagaatcacagacacaaagtgtcggtcacgttcgttgggatgttggtctcaac
cggaaaccgcaagcttttttccagttgccaaaattttcggaaggaagtatgaagctgatg
ttgggagatgagttgcgtttaaagcactctcaaactgcaggtggtgaatggagttcgatt
gggtgtgttatcaaaatccccgacaaccataacgatgaggttgggatcgaaatgcgtttg
aaggccgagaatgtacccactgacacacgaacgaattttacatgtgaatttgtgtggaac
tcgacatcattcgacagaatgcaggctgcgctgtctttattgggtcaagatgaagattgt
gtttcacagtttatctatcacaagttaatgggtcacgatattgatgatattatttttaaa
gtgtcattgccgaaaaggtttagcgtaccaggtttaccagagttgaatcacagtcaggtg
cacgcagtcaaaactgttttacaacgacccctgtcacttattcagggaccacctggaacc
ggtaaaactgtgacttcagctaccatcgtatatcatcttgtaaagcaaactaatggtcaa
gtacttgtatgtgcgccgtccaatattgcagttgatcagctagctgaaaaaatacatcgt
acaggattaaaggtcgtgcggctgtgtgcaaaaagccgtgaaacgcttgatagtccagtt
gcctttctcgcattgcacaatcagctgaaagctttgcacggtgcagctgaattgcataag
ttacagcagttgaaggaagaaatcggagaattggcggatgcagatgagcgtcgctttcgt
gccttgcgtatagcgaaggaatgccaactgttggctgctgctgacgttatttgttgtacg
tgtgtctcggctgcagatagccgtctctcacatatgagaattaaatgtgttttgattgat
gagtcgacacaagctacggaacctgaggtaatggtagctgttgtttgcggtgtacgtcaa
ctggtacttgttggggaccactgtcaattgggtcctgtgattatgtgtaagaaggcagcc
aaagctggtttgtcacaatcactttttgaacggcttgttttgcttggaaatcgtccgatt
cgcctacaagtacagtatcgtatgcatcccgcgctctcgtcgtttccgagcaatgttttc
tacgaaggaagcttgcaaaatggtgttactgaaggagagcgacaattgattgggattgat
tggcagtggccggtaccagataaaccgatgatgttttggagttgctatggccaagaggag
cttagctcttcaggcacttcatttctaaatagaactgaagcagcgaacgttgagaaacta
gccactcgttttctcaaagctggaataaaaccggaacaaattggtataatcactccctat
gaaggacaaagatcgtacattgtacaattcatgcaaacacagggtgctttgcatagtaag
ttgtatctcgaaatggaggttgctaatgtggatgctttccagggccgtgaaaaggatatc
ataatagtgacatgtgttcgatctaatgatcatcaaggcattggtttcctgaatgattct
agacgtttgaatgttgcacttacacgcgctaaatttggccttatcatagttggcaacgca
aaagtactatcgagacatccactgtggaattatttactatctgtgttcaaggaaaagggt
tgcctcgttgaaggcccattgaataatttgaaaccgtcaccaattacactttccaaaccg
cgtcgtgttccgcacgttatgaatatgaatcgtttcattccacgtggagcagttttggca
aaagatatacagggcagtgcatttggtactcgtagtcgagatttgcggacgatacaagat
ccattcgcagccattactcatgatcagttacgacctcaaaatgggatcaacattccggta
cccatacagatgtttgttcaaccgccgcctcattattatcgacctccacctaatccacgt
tatggcgatttgaattctgctaccggtagtacggcacggaatcgtaaacatttggaaaca
ctgaatatgtttagttcacaacagtctcaagatcccatttatatgcaacaaatcggcgaa
atgtcgggtatatcccaggatacatcggattggacgcagtcgcaaacacagcatggtgct
tctcaaggaggtatttcgtccagccaggatcaattattggttagccaaatggaatcactc
tttctgtcgcaagatgcaaatacggaaaattataatttcggtgatgtaagtcagtattaa
DBGET
integrated database retrieval system
