Loa loa (eye worm): LOAG_06429
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Entry
LOAG_06429 CDS
T02664
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
loa
Loa loa (eye worm)
Pathway
loa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOAG_06429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loa03019
]
LOAG_06429
03041 Spliceosome [BR:
loa03041
]
LOAG_06429
03009 Ribosome biogenesis [BR:
loa03009
]
LOAG_06429
03016 Transfer RNA biogenesis [BR:
loa03016
]
LOAG_06429
Enzymes [BR:
loa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOAG_06429
Messenger RNA biogenesis [BR:
loa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LOAG_06429
Spliceosome [BR:
loa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LOAG_06429
Complex C
U4/U6.U5 tri-SnRNP related factors
LOAG_06429
Ribosome biogenesis [BR:
loa03009
]
Eukaryotic type
Pre-60S particles
Helicases
LOAG_06429
Transfer RNA biogenesis [BR:
loa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LOAG_06429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
UPF0449
Motif
Other DBs
NCBI-GeneID:
9943843
NCBI-ProteinID:
XP_020302595
UniProt:
A0A1S0TYF9
LinkDB
All DBs
AA seq
1008 aa
AA seq
DB search
MDKDMEIFDVFAGSSGSLSSCSTGKKKLSSGSFQKAEMNKKRQMEARERANQLLGQLATG
NAANNIRMVSSDDDDDDDCDHDYEADDNDTGVLSKRSKNETNAEELPGLASHPRNNIKTV
ESEGNCSHEVVLPPNMEYVPLKPRTTAPAKMYEFQLDAFQREAITCIDNSHSVLVSAHTS
AGKTVVALYAIAMSLRDKQRVIYTSPIKALSNQKYRELEEEFGDVGLMTGDNTLNPDASC
IVMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETIILLPDTVHYVFLSA
TIPNARQFADWVVYLHDQPVHVIYTDYRPVPLQHFIYPAGGSGLYEVVNMQGIFREDKFT
EAMNVLSQVGDAGHGGINKGKKGGTSGTPHVVNIIRTLKERDMIPVIIFSFSRKECEAYA
TQMTNLDFNTEDEKAKVKEIFVNAISLLSDEDSKLPEIGRVLPLLLRGIGVHHSGLLPIV
KEVIEILFGEGLIKTLFATETFAMGLNMPARTVLFTSARKFDGKDYRWITSGEYIQMSGR
AGRRGKDDRGLVILMVDQQMGQDVAKQIIKGAPDPLNSQFRLTYNMVLNLLRVEGINPEF
MLENSFYQFQNYDALPQLYGNVERKKEELAAYKIDRETEISGYYQMEKQVDVLKEAVKEV
VMKPKHLIPFLQAGRLLHIVSNDKDFGWAALLDFHKKANPVDPLGLDLMYVLDVLMLLSA
ESAKNLSDITQLRPPNANEKGVVEVVSVAISCVSEISAARVKLPQNLKAYEGKQSAGRVI
KEVLKRFNGIMPLLDPLNDMKINDLVLQENISKLQALEKRKDSHPLRANSKFDEIYKQYE
KKLELEAELKVAKTELKKAQSLLQLDELKCRKRVLRRLQYCDENDVITQKGRVSCEVSAA
DELMLTEMMFGGIFTELATPQLAALLSCFVFEEKAGGTKLADDLSGCLRAMQEYARRIAK
VTKESKLEIDEDKYVESFKPHLMDVVHAWCTGASFAEILKKRMFLKVQ
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggataaagatatggaaatcttcgatgtttttgcaggaagtagtggttcactatcatcc
tgtagtactgggaagaaaaaactatcgagcggatcttttcaaaaggcagagatgaataag
aagagacagatggaagctcgtgaacgagccaaccaattactgggacagttagcgacaggt
aacgctgcaaataatattaggatggtatccagcgatgatgatgatgatgatgattgtgat
catgattatgaggcagatgacaacgatacaggagtgttatcgaaaagatcgaaaaatgag
accaatgcagaagagcttcctggtttagcttcccatccacgcaacaatatcaaaactgtc
gaaagtgaaggaaattgttcacatgaagttgttttgccaccaaatatggaatatgtacca
ttgaagccacgtacaacagctccagccaagatgtatgagttccagttagatgcctttcaa
cgggaagcaatcacgtgtattgacaatagccattccgttcttgtgtctgctcatacttct
gctggaaaaactgttgttgcattatatgcgatagcgatgtctctacgtgataagcagcgc
gttatatatacttcacctatcaaagctttgtctaatcagaaatatcgagaattggaagaa
gaatttggtgacgtaggtttgatgactggtgacaatacactgaatccggatgcttcttgc
attgttatgactacagaaattttgcgatcaatgttatatcgtggttcagagattatgagg
gaagttggatgggttattttcgatgaaattcactatatgcgcgataaagaacgtggcgtt
gtatgggaagaaacaattattttgctacccgacactgtacactatgtttttctttccgct
acgatcccaaatgcaaggcaatttgcagactgggtagtttatcttcacgatcaaccggtt
catgtcatatataccgactaccgtccagtacctttgcaacacttcatatatccagcgggc
ggttcaggcctgtatgaagttgtaaatatgcagggaattttccgagaagataaatttacc
gaagcaatgaatgtattgtcacaagtgggagatgcagggcatggtggaatcaacaaagga
aagaaaggtggaacatcaggcacacctcatgtggtgaatataatacgtacgcttaaggaa
cgtgatatgattccagtcatcattttctcattcagtcgaaaagagtgtgaagcatatgca
acgcaaatgacgaatttggatttcaatacagaagacgaaaaagcgaaggtaaaagaaata
tttgttaatgcaatcagtttattatctgacgaagacagcaaattacctgaaattggacga
gtattaccattattattgcgtggtattggagtgcatcattcgggtttgctgccaattgtt
aaggaagtgatcgagattttattcggagagggtttgatcaaaactctgtttgctactgaa
acttttgccatgggtttaaatatgcctgcgcggacggtgctgttcacatcggcaagaaaa
ttcgatggaaaagattacaggtggattacatcgggtgaatatatccaaatgagtgggcga
gctggacgtcgaggtaaagacgatcgcggccttgtgatactaatggtcgatcagcagatg
ggacaggatgtagctaaacagattattaaaggtgcaccagacccgcttaattcgcagttt
cgtttgacgtataatatggttctgaacttgcttcgagttgaaggcatcaatcctgaattt
atgctggagaattcattttatcagttccagaattatgatgccctaccgcaactctatgga
aacgtggaaagaaagaaggaggaacttgctgcctataaaattgacagagaaacagaaata
tcaggttattatcaaatggaaaaacaggttgatgtattaaaagaagccgtaaaagaggtc
gttatgaagcctaagcatcttataccctttcttcaagctgggcgtttgcttcacattgtt
tcaaacgataaagattttggatgggcggctctgttggacttccacaaaaaagcgaacccg
gttgatcctcttggcttggacttgatgtacgtactagatgtattgatgttactgtctgca
gaaagtgcgaaaaacttgtcagatattacacagttgcgaccacctaatgcgaatgagaag
ggagttgtagaggttgtatctgtcgcgatcagttgtgtatctgaaataagtgcggcacgc
gtaaagttaccgcagaacctgaaagcatatgaaggaaaacaaagtgctggtcgcgttata
aaagaagttttgaaaaggttcaacggaattatgcctttgcttgatccactgaacgatatg
aaaataaatgatttagtgctgcaggaaaatatttctaagttgcaagcactggaaaagaga
aaggatagccatcctttgagggcgaatagtaaatttgacgaaatctacaagcagtatgaa
aagaagctagagttggaagcggaactgaaggtggcaaaaactgagctaaagaaagcgcaa
agtttattgcagctggatgagttgaaatgtcgcaagcgtgtgcttcgaagattgcaatat
tgtgacgaaaatgatgttattacacaaaaggggcgtgtctcgtgtgaagtaagtgctgca
gatgagctgatgttaacggagatgatgtttggtggcatatttaccgagcttgctactccg
caattggcagctttgctttcgtgttttgtatttgaagaaaaagcagggggaacaaaacta
gcagatgatctcagtgggtgtttgagagcaatgcaagaatacgctagacgcattgcgaag
gtgacaaaggaatcaaagcttgagattgatgaagacaaatatgtggagtcgtttaagccg
catttgatggatgtagtccatgcatggtgtactggtgcttcttttgctgaaattttaaaa
aaacggatgtttttgaaggttcaataa
DBGET
integrated database retrieval system
