Loa loa (eye worm): LOAG_06607
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Entry
LOAG_06607 CDS
T02664
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
loa
Loa loa (eye worm)
Pathway
loa03020
RNA polymerase
loa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
loa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOAG_06607
09124 Replication and repair
03420 Nucleotide excision repair
LOAG_06607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loa03021
]
LOAG_06607
03400 DNA repair and recombination proteins [BR:
loa03400
]
LOAG_06607
Enzymes [BR:
loa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOAG_06607
Transcription machinery [BR:
loa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
LOAG_06607
DNA repair and recombination proteins [BR:
loa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
LOAG_06607
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
DUF5816
Motif
Other DBs
NCBI-GeneID:
9944021
NCBI-ProteinID:
XP_003142191
UniProt:
A0A1I7VSZ0
LinkDB
All DBs
AA seq
1171 aa
AA seq
DB search
MFEEDEEIEEAPFEEDEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRI
VEDSPPVELQSEVQHFSGDVENPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNL
TYSSPLYIDITKTMTRIGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECP
LDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYTYKTECRSCLENSSRPTSTLWVN
MLPRGGGGSKKSAMGPKIIAILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMM
EMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFCE
TKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLT
AQKYINKNGDFMLDLCVKTPLITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTAT
LSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLP
EPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGIHRDPEQLMTTLKKLRREMDIIV
SEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDNSYTWSELVAGGV
VELIDAMEEETVMLAMMPEDLKAGGYCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNT
YQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAIL
SYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHS
LYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDATIKRYTKKDASTFLRSSETGI
VDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITP
DIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISNLLQEYGYHLR
GNEIMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGG
LRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVVANLRTNSFECKACRNK
TQVSAFRIPYACKLLFQELMSMSIAPRLMVS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaggaagatgaggaaatcgaagaagctcccttcgaggaagatgaagaaatttca
tcggaacagtggcaggaagcttgctgggttgtgatttcggcgtatttcgatgaaaaaggc
cttgtaagacagcagttggacagtttcgatgaattcattcaaatgaatgtccagcgaatt
gtcgaagactcacctcctgttgaacttcaatccgaagttcaacacttctccggtgatgtc
gaaaatcctatcaagttcgccttaaaattcgatcagatctatctgtcaaagccaactcat
tgggaaaaggatggtgcaccaacccccatgatgccaaacgaggcacgtctgcgaaacttg
acatattcctcgcctctttatattgatataacgaagacaatgacacgcatcggtgaggaa
ccaaaggaaacgaaatatgaaaaagtatttgtcgggaagattccgattatgcttagatct
tcatactgcatgttagcgaatatgtccgaccgtgatttatccgagttgaacgagtgtcct
ttggatcctggaggttacttcgtcattaatggttctgaaaaggtcctgattgctcaggaa
aaaatggctaccaatacagtttatgtcttttctatgaaagatgggaagtacacatacaaa
actgagtgtcgctcctgtcttgaaaattcaagccgtccaacatcaactctgtgggttaac
atgttacctcgaggtggcggaggtagcaagaaatctgctatgggacctaaaattattgcc
attttaccgtacattaaacaggaaattcctgtgatgatcgtgtttcgcgctctaggtttt
gtgtctgatcatgatatattggaacatataatttacgacttcgaagatccagaaatgatg
gagatggtaaaaccaagtcttgatgaagctttcgttattcaggagcaaaacgttgcgcta
aacttcattggtgcacgtggtgccaagccaggtgttacaaaggagcagcgtattaaatat
gccaaagaaatattgcaaaaggaaatgcttccgcatgttggcatatcggacttttgcgaa
acgaagaaagcgtatttcttgggctatatggtccataggctattactggcagctcttgga
cgtcgcgaattagatgatcgtgatcatatgggaaacaaacgattggatcttgctggacct
ttgctagcatttctcttccgagcacttttcaggaaccttctgaaagaagtacgcttaacg
gcacagaaatacatcaataagaatggtgattttatgttagatttatgcgtgaaaacgcca
cttattactcgtggccttgcgtattctttagcaacaggtaattggggagaccaaaaaaag
gcacatcaatcacgagctggtgttagccaggtactaaatcgtttgacatatactgcaacg
ttgtcgcatttgcgtcgttgtaattcaccaattgggcgagaagggaaattggcgaaacca
cgtcagctgcacaatacacagtggggtatggtttgcccagccgaaactcctgaaggccaa
gctgttggtttagtgaagaatctagcacttatggcttatatttctgttggtagtttgcca
gagccaattcttgaatttctggaagaatggtctatggaaaatctcgaagaagtagcacca
acagcgattgctgacgctacaaagatttttgttaatggtgcttgggttggtatccacaga
gacccagaacaactaatgaccacattgaaaaagctgcgaagagaaatggacattattgtt
tcagaagtatctatggttcgagatatcagggatcgggaaattcgtatttatacagatgct
gggcgtgtctgtaggcccttattgattgttgaaaaccaaaaattggctttgaaaaggaag
cacattgatcaactgaaggataacagctacacttggtcagaacttgttgcgggtggcgta
gtagagcttattgatgctatggaagaagagacagtaatgcttgcaatgatgccggaggat
ttaaaagctggaggatactgcgatacttacacacattgtgaaattcatccagcaatgatt
ttgggtgtttgtgcctcgattataccttttcctgatcataatcaaagcccacgaaataca
tatcaaagtgccatgggtaaacaagctatgggtgtctataccaccaattttcatgttaga
atggatacgcttgctcatgtgctgtattatccgcagaagcctctggtcacaactagatct
atggagtacctcagattcaatgaactgcctgctggaattaatgctattgtcgctattttg
tcttacactggttataatcaagaagattcaattattatgaatcaatctggtattgatagg
ggtctgtttagatcggtgttttatcgttcatatcgtgatcaggaggccaatttagataat
gcaaacgaagaattaatcgagaaacccacaagggacaaatgttcgggtatgcgacattca
ctttatgataagctggatgaagatggtataatctcgcctggaatgcgtgtttcgggtgat
gacgttattattggaaaaacaatatcactaccagacaccgaagatgatttggatgcaaca
atcaagcgatatacgaaaaaagatgccagtacatttttacgaagcagtgaaacaggcatt
gttgatcaagtcatgttgactctgaacacggatggtaacaagtttgtcaaaattcgtgtg
cgatcagtacgtctgccacaaattggtgataagtttgcatcaaggcatggtcagaaaggc
acaatgggtatgatgtacagacaggaagatatgccttttacaaatgaaggtataactcca
gacatcattatcaatccgcatgcagtgccttctcgtatgacaattggacacttgatcgaa
tgtttgcagggaaaattgtccgcgaacaaaggtgagattggtgatgcaacacctttcaac
gacacagttaacgtccagaaaattagtaatttattacaagaatatggttatcatctgcgt
ggaaatgaaatcatgtataatgggcatactggtcgaaaactcacaattcaggttttcttg
ggtccaacttattatcaacggttaaaacatatggtggatgacaagattcattcgagagct
cgtgggcccgtgcaaatgatgaatcgacaacccatggagggcagagctagggatggcggc
cttcgtttcggcgagatggaacgagattgtcagatctcacacggagcagcacaattcttg
cgggaacgtctttttgaagtatctgacccttaccatgtatatatttgcaacaactgtggt
ttaattgtggtggctaatttgcgaacaaactcatttgagtgcaaagcgtgccgaaataag
acacaagtgtcggcatttcgtatcccatatgcttgcaaactgttattccaggaactgatg
tcgatgtcaattgcaccgcgtcttatggtttcttga
DBGET
integrated database retrieval system
