Loa loa (eye worm): LOAG_16549
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Entry
LOAG_16549 CDS
T02664
Name
(RefSeq) Xab2 protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
loa
Loa loa (eye worm)
Pathway
loa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOAG_16549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loa03019
]
LOAG_16549
03041 Spliceosome [BR:
loa03041
]
LOAG_16549
Messenger RNA biogenesis [BR:
loa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
LOAG_16549
Spliceosome [BR:
loa03041
]
Complex B
Other components
Prp19-related factors
LOAG_16549
Complex C
LOAG_16549
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_2
TPR_8
TPR_12
UTP6_C
NRDE-2
ARCH_RTEL1
TPR_7
Motif
Other DBs
NCBI-GeneID:
9945731
NCBI-ProteinID:
XP_020307325
UniProt:
A0A1I7VPH0
LinkDB
All DBs
AA seq
903 aa
AA seq
DB search
MDPPDAIYQEATKEPTKYAYTDGSTVLVEEKKLQSEIMANQVLEASSSVYAGTVERTKKV
APVIFEEDVGFEEDILKNPFSLRSWLRYIEHKKKCKAPLKQINLVYERALKELPGSYKLW
YNYLRFRRKQVIDKCPTDPAYKHVNNAYERALVFMHKMPRIWMEYCEFLTLQRFVTQTRR
VFDRSLRALPVTQHDRIWPLYIKFVTSHEIPETTIRVYRRYLKLLPKCREDFVDYLRKID
HLDDAAQQLAILVNDDKPYSEHGRTTHQLWTDLCELISKNPNKVHSLNGDSIIRQGIQRY
SDQVGLLWCSLAEYYIRDGHFERARDVYEEALVSVKTVRDFTQIFDAYAKFAERATAAKM
DEIDNEDIVADEEQQLELELLFARFEHLMDRRPLLLNSVLLRQNPHNAYEWLNRVRLYEG
NKKKQIETYEQAVQTVQPKLQTGKLSNIWISFAKFYEQEDILSEARLIFEKGLRPEYTKV
DDLASVWCEYVEFELRHRDPENARKLMQRATAMPPRKTHYFDETEPVQNRLYKSLKIWSL
YADIEEAFGTLESCQAVYERIIDLRIATPQIVVNYAKFLEENNYFENAFKAYEKGIALFK
WPIVNEIWTVYLVKFLKRYGGKKLERARDLFEQCLENCPPKFAMKLYLLYAKLEEEYGLP
RHAMNIYNRATAAVEKHEMYNMFNIYIKKATSMYGLTFTRPIFEHAIEVLPEDQSREMSI
RFAQMERTLGEIDRARAIYAHCSEICDPRVHGMFWEIWKEFEVKHGNEDTVREMLRIKRS
VQATYNTNVNIMSAQMLSTVAGASAGTIIHEPSTAGDSMAMLEARAQKIAEEETGVAKLA
IGGTGIKFVRGAVNMIESNVTENPEEIDIGDDEGDDEQKNLDDVETKAVPAGVLGSLVKQ
NDQ
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggatccaccagatgcgatctaccaggaagcaacaaaagaaccaacgaaatatgcatac
acagacgggagtacagttctcgttgaagagaaaaagttgcaaagtgagataatggcgaat
caggttctagaagcatccagcagtgtttatgctggtacagtagaaaggaccaagaaagtt
gcaccagtgattttcgaagaagatgtcgggttcgaggaggatatactcaaaaatccgttt
tcacttcgaagctggttgagatatatcgaacacaagaagaaatgtaaagcaccattaaaa
caaatcaacctagtgtatgaacgagctttaaaggaacttccgggcagttataagctatgg
tacaattatcttcgatttcgtcggaaacaggtgatagataaatgtcctacagatccagca
tataagcacgttaacaatgcctatgaacgagctttggttttcatgcacaagatgcctcga
atatggatggaatactgtgaatttttaacattacaacgttttgtgacacaaactagacga
gtttttgatcgttccctgcgtgcactaccagttactcaacatgatcgaatttggccgctt
tatatcaagtttgttacaagccatgaaattccggaaacgacaattagagtttaccggaga
tatttgaaattgctaccaaagtgtcgcgaagactttgttgattacttacggaagattgat
cacttagacgatgctgctcagcagcttgccatccttgtgaacgatgataaaccatattcc
gagcatggcagaacaactcatcagctgtggactgacctctgtgaattgatttcgaagaat
cccaataaagtgcattcattgaatggtgattcaatcatacgacaaggcatacaaaggtat
agcgatcaggtaggacttctctggtgttcacttgcagagtattatattagagatggacac
tttgaacgggcaagagatgtgtatgaagaagcactggtatcagtcaaaactgtgcgggac
ttcacgcagatatttgacgcctatgccaaatttgctgaacgtgcaacagcagcaaaaatg
gacgaaatagataatgaagacattgtagctgatgaagaacagcaattggaattggagctt
ctctttgcaagatttgagcatttaatggaccgtcgaccgcttcttttaaacagtgtcttg
ttgcgtcaaaatcctcataatgcatatgaatggttaaatcgtgtccggttatatgaaggc
aataaaaagaagcaaatcgagacatatgaacaagctgtgcaaacagtgcaacccaaacta
caaacggggaagttatcaaatatttggataagtttcgcaaaattttatgaacaagaggac
atattgagcgaagctagattaatatttgaaaaaggactgaggcctgaatataccaaggta
gatgatcttgcgtcggtttggtgtgaatacgttgaatttgagctacgccaccgggatcct
gaaaatgctagaaagttaatgcaacgagcaactgctatgccacctcgaaaaactcattac
tttgatgaaactgaaccagttcagaatcggctatacaaatctttgaagatttggtctttg
tatgctgatatcgaagaagcatttggtactcttgaaagttgtcaggctgtttatgaaagg
attattgatttacggattgctactccacaaatagtggttaattatgctaaatttttggaa
gaaaacaattattttgagaacgctttcaaggcctacgagaaaggtatagcactgtttaaa
tggccaattgtcaatgaaatttggaccgtatatttggttaaatttctaaaacgatatggt
ggcaaaaaattggaacgtgcgcgcgatctcttcgagcagtgtttagaaaattgtccacca
aaatttgcgatgaagctttatttgctgtatgcgaagctggaagaagaatatggtttgcca
cggcacgcaatgaacatttataatcgtgcgaccgctgcagttgaaaaacatgaaatgtac
aatatgttcaatatctacattaaaaaggcgactagtatgtacggtttaacatttacaaga
ccaatatttgagcacgctattgaagttcttccggaagatcagtccagggagatgagtatt
cgatttgcacaaatggaacgaacactgggtgagattgatcgagcgcgggcaatatatgct
cactgctctgaaatatgtgatcctcgggttcatggtatgttctgggaaatttggaaagaa
tttgaagtgaagcatggtaatgaggatacggtaagggagatgttgcgtataaaaagatct
gtacaagcaacttacaacacaaacgtcaatatcatgagtgcacagatgttgtccacagta
gcgggtgcatccgcaggcacaattatccatgaaccaagcacggctggtgatagcatggca
atgcttgaagctcgtgctcagaaaatcgccgaagaagaaacaggtgtagcgaagttggca
ataggcggtacaggtatcaaatttgtacgaggagctgtcaatatgatcgaatcaaatgtc
acagaaaatccagaggaaattgatatcggcgatgatgagggtgatgacgagcaaaaaaat
ttggatgatgtggaaacgaaggctgtaccggcaggtgttttgggttcacttgtaaaacaa
aatgatcaataa
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