Loa loa (eye worm): LOAG_17406
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Entry
LOAG_17406 CDS
T02664
Name
(RefSeq) HMG box family protein
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
loa
Loa loa (eye worm)
Brite
KEGG Orthology (KO) [BR:
loa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
loa03000
]
LOAG_17406
Transcription factors [BR:
loa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
LOAG_17406
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
stn_TNFRSF12A
Motif
Other DBs
NCBI-GeneID:
9942120
NCBI-ProteinID:
XP_020306303
LinkDB
All DBs
AA seq
597 aa
AA seq
DB search
MSGRRKTMPTRLLETVETYYPVATVESMPSTSTANGVQTVKGTLLITEPNKPVKMSTEKL
IMDNIVKQGEITKHRIMREFTSASSPRGQVDSLKSDTSSISEHTSTSGSAGVTDIPDILA
QTEHGCRVLIDGHALREVLNSVDTYDGKLDLVQDLIRQLKAVKERLSCGEIHISKEDIED
TSLKDTDELVAEAKEQNCFQRMSAGNLDEFMIRQQYFIQQQQNQQRLLAMASALHAAQHS
SAVRLGCMLPSATTYGQFLNGTTLGNDCGVRTAATVLSQSVNNEMNNVTNHLGTKGLDCI
DRNGCETPLNLSKVKLKSPTDHSKARKVTLLNSTSSKKPSSPFEQQIPNRLPCSSIPHSF
ASETSAFTSHSPGSSGESTPGGVVTSDSIPARIPAKSPNHIKRPMNAFMVWARDERRKIL
KACPDMHNSNISKILGSRWKAMSNTEKQPYYEEQSRLSKLHMEQHPDYRYRPRPKRTCVV
DGRKVRINEYKNLMRNKTVANSVGTTGCSSATSEWSSDVDQCGATVSPGSGSSQSLTVNS
NLLSTSAATAVILPENNSDATTHSRSFSSVDFASLNGATVLTNLAHHHHCHMLQTAE
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtcgtcgtaagacgatgccaacaagacttttggaaaccgtggaaacttattat
ccagtagcaactgttgaatcaatgccaagtacttcaaccgctaatggtgttcaaacggtc
aagggtactctactgataacagaaccaaataaaccagtgaaaatgtccaccgaaaagctt
attatggacaacattgttaagcaaggagaaataactaagcatcgtattatgagggagttc
acttctgcttcatcacctcgagggcaagttgattcgttgaagagcgatacttccagcatt
tctgaacataccagcacgtcaggttcagccggagtgacggatatcccggatatcttggca
caaacggagcatggatgtcgtgtacttattgatggtcacgcactgcgtgaggtcctaaac
agcgtcgacacgtacgacggcaaacttgatctcgtgcaagatcttattcgacagttgaaa
gctgttaaagaacgtttgagctgtggtgaaatacatatcagcaaagaggatatcgaggat
acaagtcttaaagatacggacgaattggttgcggaagcgaaggaacaaaactgttttcag
agaatgtcagctgggaatttagatgaattcatgattaggcaacaatactttatccaacaa
caacagaatcaacaacggttgcttgctatggcatctgcccttcatgctgcacaacattcc
agcgctgtacgattaggttgtatgctaccgtctgcaacaacatatgggcagtttttaaat
ggaacgacacttggaaacgattgtggtgttcgaactgcggcgacagtgctttcccaaagt
gttaataatgaaatgaataatgtaaccaatcatttggggacaaaggggctcgattgtatt
gatcgaaatggttgcgaaacaccgctgaatttgagcaaagtgaaattgaaaagtccgaca
gatcattccaaagcacgtaaagtaacactgctgaacagtactagttcaaaaaaaccaagc
tcaccatttgagcaacaaattcccaaccgactaccttgctcttcgatcccacattctttt
gcctccgaaacatcagctttcactagtcattcaccgggttcatcaggagaaagcacacct
ggaggggtggtgacttcagatagtattccggctcgaattcctgccaagtcaccgaatcac
atcaaacgcccgatgaatgccttcatggtctgggcacgtgatgagcgaaggaaaatcttg
aaggcttgtccagatatgcacaacagtaatatttcaaaaatccttggatcgaggtggaag
gcaatgtctaatacagagaagcagccatattacgaagaacagtcccgattgagcaagttg
catatggagcaacatccggattatcgttacaggcctaggccgaaacgaacatgtgtggtc
gatggcaggaaagtacgtatcaatgaatacaagaatttaatgagaaacaaaacagtggca
aattcagttggtaccactggttgttcgtctgctacaagtgaatggagtagtgacgttgat
cagtgtggagcgactgtgagtcctggatctggttccagtcaatccttaacagttaacagt
aatctactatctacatcggcggcaacagcagtgatacttcccgaaaataatagtgacgct
accacacattctcgatcattctcatctgtcgattttgccagtctcaatggcgctacagtg
ctcaccaatctagcccatcatcatcattgccatatgttacaaaccgctgaatag
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