Loa loa (eye worm): LOAG_18422
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Entry
LOAG_18422 CDS
T02664
Name
(RefSeq) spliceosome RNA helicase BAT1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
loa
Loa loa (eye worm)
Pathway
loa03013
Nucleocytoplasmic transport
loa03015
mRNA surveillance pathway
loa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOAG_18422
09122 Translation
03013 Nucleocytoplasmic transport
LOAG_18422
03015 mRNA surveillance pathway
LOAG_18422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loa03019
]
LOAG_18422
03041 Spliceosome [BR:
loa03041
]
LOAG_18422
Enzymes [BR:
loa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOAG_18422
Messenger RNA biogenesis [BR:
loa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LOAG_18422
Spliceosome [BR:
loa03041
]
Complex C
Other components
EJC/TREX
LOAG_18422
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
LOAG_18422
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
DUF5416
Motif
Other DBs
NCBI-GeneID:
9950853
NCBI-ProteinID:
XP_020305169
UniProt:
A0A1I7W3Z4
LinkDB
All DBs
AA seq
426 aa
AA seq
DB search
MDEDQLLDYEEEQEETTDGNKAENGSATDKKIKGTYASIHSSGFRDFLLKPELLRAIVDC
GFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTR
ELAFQISKEYERFSKYIPGVRIAVFFGGIPIKKDEETLKNNTPHIVVGTPGRTLQLARQG
SLKLKNIKYFVLDECDKMIGDNDMRRDVQEIVKMTPQEKQVMMFSATLPRDLRVVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKETEKNKKLLELLDQLEFNQVVIFVRSVQRCGAL
HTLLSEQNFPSIAIHRGMPQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFDVNVTELPAEIEVATY
IEGRAN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagatcagctgttggactatgaggaagagcaagaagagacgactgatggtaac
aaagcagaaaatggatcagcaacggataagaaaatcaagggtacttatgcatccatccac
agcagtggtttccgggatttcctcttgaagccggagctattacgggcaattgtggattgt
ggtttcgaacatccttcggaagtacaacatgaatgcattccccaggctattttgggcatg
gatattgtttgtcaagcaaaatcagggatgggcaaaacagctgtatttgttctggcgact
ctacaacaacttgaacctgtcgatggtgaggtgtctgttctggtcatgtgccacacacgc
gaactggcgttccagatttcgaaggagtacgaacgattcagcaaatacattcctggtgtt
cggattgctgtcttctttggtggcataccaatcaaaaaggatgaagagacacttaaaaac
aatacaccacacatcgttgttggaactcccggccgtactctccaactagcacgacaagga
agcttgaaattgaagaacatcaagtatttcgttttggatgagtgcgacaaaatgattggt
gataatgatatgagacgagacgttcaagaaattgtgaaaatgacgccgcaagagaaacag
gtgatgatgttcagcgctacgttaccaagggatttacgagtggtctgcaagaaattcatg
caagatccaatggaagtatacgttgatgatgaagcaaagttaacgttgcatggattacag
cagcattatgtgaaactgaaggaaactgagaaaaataaaaaattacttgaattactcgat
cagttggaattcaaccaagtcgtaatttttgtgcgatctgtacaacgctgtggtgctttg
cacactttgctctccgaacaaaattttccaagtattgcaattcaccgtggtatgccacag
gaggaacgcctttctcgataccagcagttcaaagacttccagaagcgtatccttgttgca
acgaatctttttggtcgtggtatggatattgaacgcgtgaatattgtgttcaattatgac
atgccggaagattcagacacatacttgcacagagtagcacgcgctggacgtttcggtact
aaaggattggcgataacatttgtctcagatgaaaatgatgcgaaaattctgaatgatgta
caggacaggtttgacgtgaatgttaccgaattgccagctgaaattgaggtcgcgacatac
attgagggacgagctaactga
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