Candidatus Lokiarchaeum ossiferum: NEF87_001159
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Entry
NEF87_001159 CDS
T09593
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NEF87_001159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lob03400
]
NEF87_001159
Enzymes [BR:
lob01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NEF87_001159
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NEF87_001159
DNA repair and recombination proteins [BR:
lob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NEF87_001159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
zf-FPG_IleRS
Ribosomal_S13
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
UYP44874
LinkDB
All DBs
Position
complement(1431862..1432647)
Genome browser
AA seq
261 aa
AA seq
DB search
MPELPEVEAFRQYFNIHALNKAITSVNIVEEKILKGSSAEKLLQFCQQAKFIQTSRRGKF
MFAKLSSEGGLLFHFGMTGDFRYSNSNEKLHKHDRLVFNFKNGYYLAYISQRKFGRVEYI
ANIDEYIKSQRFGPDALSITPSELQRQLQGRNRKIKSALLDQKIIAGVGNLYADEALFQA
QIRPDRLTKELSADELIRLAKKIKKIMIHAVQQGNEYGEPFSSDYFISFRKKDGCCPICN
TLLSRLPIAQRTTYFCEKCQK
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattaccggaagtagaagcttttcgacaatattttaacattcacgccttgaat
aaggccatcacttcagtgaatatcgtggaagaaaagattcttaaaggtagttctgccgag
aaactgctccaattttgtcaacaagcgaaatttattcaaacttcgcggagaggaaagttt
atgtttgccaagctatccagtgaagggggtcttttattccattttgggatgactggtgat
tttcgctacagtaactctaatgaaaaactccataaacatgatcggttagtctttaatttt
aagaatggatattatttagcttatatatcacagagaaaatttggacgggtggaatatata
gccaatatagatgaatacattaaatcacaaagattcggtcctgatgcattaagtattacc
ccctcagaacttcaaagacaattgcaagggcgaaatcgaaaaattaaatctgctttatta
gatcaaaaaattatagcgggagtggggaacttatatgctgacgaagctttatttcaagca
caaattcgccccgatcgtcttacaaaggaattatccgctgatgaacttatccgtttagca
aaaaaaataaagaagatcatgattcacgctgtccaacaaggtaatgaatacggggaaccc
ttctcatcggactactttatttccttccgaaaaaaggatggatgctgcccgatttgcaat
actcttctttcccgtctacctattgcacagcgtacgacttatttttgtgaaaaatgccaa
aaataa
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