Candidatus Lokiarchaeum ossiferum: NEF87_001183
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Entry
NEF87_001183 CDS
T09593
Name
(GenBank) UvrABC system protein A
KO
K03701
excinuclease ABC subunit A
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NEF87_001183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lob03400
]
NEF87_001183
DNA repair and recombination proteins [BR:
lob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NEF87_001183
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NEF87_001183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
RsgA_GTPase
AAA_29
AAA_16
AAA_25
nSTAND1
AAA_15
DnaJ_CXXCXGXG
cobW
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UYP44898
LinkDB
All DBs
Position
complement(1457862..1461041)
Genome browser
AA seq
1059 aa
AA seq
DB search
MTKSSIIVKGARQNNLKNINIEIPRDKLVVFTGLSGSGKSSLAIDTIYAEGQRRYLESLN
TYARQFLGSMDKPDLDYIEGLSPSIAIEQKSVSKNPRSTVGTVTEIYDYLRLLYANIGIP
HCPTCGQEITPLTTQEITESILKELPVNTKFRVLSPIIQRRKGEYSAIFKQLKKDGFVRV
IVDEIEYELDEEISLDKNKFHDIDVVIDRLVKKDTDQFRNRLADAVEQASKLTDGLVKIW
IPEKDPKIYSERLFCPTCSLSMPDLRPQLFSFNTPHGMCPACNGLGKSNEFTEHRLFPDK
DRNLYESNLRSVGGFGTLETYSWRILETVAEHYNVNLSDPIMDLPEDFWQIFLWGSGSEK
IPFHFDSSQSNGNGDREFSYNVSRPFEGILNTLQRRYMQSSSDSSREYYEKWMEQQICRV
CHGQRLRPEALGVILHEKSIADVSTLTVDKALQFLSEVKALVSDRQMHIVKEVLKELFAR
YTFLLNVGLHYVQMDRESKTLSGGESERVRLATQIGSNLVGVLYVLDEPSIGLHPRDNYK
LVKMLEQLRDKGNSILVVEHDEGIIRSADFIVDIGPGAGIHGGEVVVADTLSVVEKHKES
LTGKYLRGELFIPTPEYRRSNDNQWITIRGARSNNLKNIDVKIPLGVLTVVTGVSGAGKS
SLIMEILYKGLHREIYRESRMIPGEFDSIDGSDAIDKIIHIDQTPIGRTPRSIPATYTKL
FDIIRDLFEKTQEAKLRGYKKGRFSFNVKGGRCEKCTGSGYNLIEMQFLPSVFVRCDVCK
GQRYNTETLEVKFKGKNIAEVLDMSHEEAYEFFENHPRMQAILKTLIDVGLGYIKLGQSS
TTLSGGEAQRVKLSRELSKRSTGKTLYILDEPTTGLHFHDTNQLILVIQRLVDQGNSVII
IEHNMDIIKSADYLIDVGPEGGDEGGEIVASGTPEEIVRVKKSYTGQFLAPVLHHANQNG
QVLDSEEHQEMLVLDPKKKSTKKSSKKSVKKSSKKSSKKSTTKSAKSRSKKTTQKSAKKS
KGSKKTAKSKKKPSPKQTSPTTKKMTDSAKVKKDTSIQT
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgactaaatctagtattattgttaagggcgctcgtcaaaataatttgaaaaatataaat
attgaaattcctcgcgataaactggtagtttttacgggtttaagtgggtcgggaaaatct
tcccttgccattgataccatatatgctgaaggacaacgcagatatttagaatccttgaat
acctatgcccgtcaatttttgggctctatggataaacccgatttagattatattgaaggc
ttatctccctccattgccattgagcaaaagagtgtgagtaaaaatccccgcagtaccgtg
ggtacggttacggaaatatatgattatctaagattgttgtacgctaatataggaatcccg
cattgtcctacatgtggtcaagaaatcactcctttaaccacacaagaaattactgaatca
atattaaaagaacttcctgttaataccaagtttcgcgttctttcccccataatccaacga
agaaagggtgaatatagtgcaattttcaagcaattaaagaaagatggctttgtaagggtg
atagttgatgagatcgaatatgaactggatgaagaaatcagtcttgacaaaaataaattt
catgatattgatgttgtaatcgatcgattagtgaaaaaagatacagatcaattccgaaat
cgattagctgatgcagtggaacaagcatcaaaattaacagatgggttagtcaagatctgg
attccagaaaaagatccgaaaatctattctgaacgcctcttttgtcctacttgtagtctt
tcgatgcccgatttacgacctcaactcttttcctttaatacacctcatgggatgtgtcct
gcttgtaatggtttaggaaaatcaaatgaatttaccgagcatcgtttatttccagataaa
gaccggaatctatacgagagcaatttacgaagtgttggcgggtttggaaccctcgaaact
tacagctggcgaatcttagaaaccgttgcggaacactataatgtgaatttatcggatcct
atcatggatttacccgaagatttttggcagatctttttatgggggtcgggctcagaaaaa
atccccttccactttgattcaagtcagtctaatggtaatggtgatcgggaattttcttac
aacgtttcccgtccttttgaaggaatattaaatacattacaacgacgctatatgcaatct
tcctctgattcaagtcgagaatattatgaaaaatggatggaacagcaaatttgtcgtgtc
tgtcatggtcaacgtcttcgtcctgaagccttaggtgtcatattgcatgaaaagagtatt
gctgatgtatcaacattgaccgttgataaagcccttcagttcttaagtgaagttaaagct
cttgtttcagatcggcaaatgcatattgtcaaagaagtacttaaagaattatttgctcga
tatacattccttttgaatgtaggtttgcactacgttcaaatggatcgagaaagtaaaaca
ttatcgggtggggaatcagaacgtgttcggttagcgactcaaattggttcgaatcttgtg
ggggttttatatgttttagatgaaccttccatcggtttacatcctcgagacaactataaa
ttagttaaaatgttggaacaacttcgcgataaaggtaattccattcttgttgttgaacat
gatgaaggaattatccgatctgcggatttcattgttgatattggtccaggggctggaatt
catggaggtgaagtggttgtggcggatacattatctgttgtagaaaagcataaggaatcg
ctgacagggaaatatcttcgcggtgaactattcattcctacacctgaatatcgacgttcc
aatgacaatcaatggataacaattagaggtgctcgctcgaataacttaaaaaatattgat
gttaagatccctcttggagttttaactgttgtaactggtgtaagtggcgcaggaaaatcg
agtttaattatggagattctctataaaggattacatcgcgaaatttatcgagaatctcga
atgattccgggtgaatttgacagtattgacggtagtgatgccattgataaaattatccat
attgatcagacaccaattggtcgaactcctcgatcgattccagcaacttatactaaacta
tttgatattatccgagatctgtttgaaaaaactcaagaagcaaaactccgaggatataag
aagggccgatttagtttcaatgtaaagggaggacgatgtgaaaagtgtactggttccggg
tataatttaattgagatgcaattccttccatctgtgtttgtacgatgcgatgtctgtaaa
ggtcaacgttataacacagagactcttgaagttaaattcaaaggtaaaaatattgccgaa
gttttagacatgtctcatgaagaagcttatgaattctttgaaaatcatccgcgcatgcaa
gccattttgaaaactctcattgatgtagggttagggtatataaaacttggacagtcatcc
accacattatcaggtggggaagctcaaagagttaaactttctcgggagttaagtaaaaga
agtacaggaaaaaccttgtatatcttagatgaacctacaacaggattgcattttcatgat
actaaccaattaattttagttattcagcgattagtagatcaaggtaattctgtaatcatc
attgaacataatatggatattattaaatctgcagattatttaattgatgttggtcctgaa
ggaggcgacgaagggggagaaattgttgcatcgggtactcctgaagagattgtgagagtc
aagaaatcttacacagggcaatttttagctcctgttcttcatcatgctaaccaaaatggt
caggttctcgatagtgaggaacaccaagaaatgcttgtattggatccaaaaaagaaatcc
actaaaaagagctcaaagaaatccgtcaaaaagagctcaaaaaaatcctcaaaaaagagt
acgacgaaatctgctaaaagcagatcaaagaaaactactcaaaagagtgcaaagaaatca
aaaggctcaaagaagactgcgaagtcgaaaaaaaaaccttcgcctaaacaaacttcccca
actactaaaaagatgaccgattctgctaaagtgaaaaaagacacttcaattcaaacttaa
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