Candidatus Lokiarchaeum ossiferum: NEF87_001958
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Entry
NEF87_001958 CDS
T09593
Name
(GenBank) Exosome complex component Csl4
KO
K07573
exosome complex component CSL4
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEF87_001958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_001958
Messenger RNA biogenesis [BR:
lob03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NEF87_001958
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NEF87_001958
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Gene cluster
GFIT
Motif
Pfam:
S1
Zn_ribbon_6
ECR1_N
HypA
OB_RRP5_4th
RRP4_S1
A2L_zn_ribbon
EXOSC1
Motif
Other DBs
NCBI-ProteinID:
UYP45673
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All DBs
Position
complement(2360337..2360933)
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AA seq
198 aa
AA seq
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MMNEIQSGTFVNIGDPLRMEEQYLGKNDSTYVEDGKVCAAISGILKVNESERTITIENTT
STNEIVPKHGDIITGEVYMIRKSSVGVRIQTLNQKLVMDLGLIGNIHVANVSRSYVDKLD
NVFQKTDMIRAKIIAQRGKEYSIATNAPNLGVITSTCKYCGKEMQRKGKGQSICPFCNHY
DRKIMANDFGDPVEVLKF
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacgaaattcaatcgggaacctttgtaaatattggtgatcctctcagaatggag
gaacaatatttagggaaaaatgactccacctatgtagaagacggaaaggtttgtgccgcg
atctctggtatattaaaagtgaatgaaagtgaacgaacaattactattgaaaacactacg
agtacaaatgaaattgtcccaaaacatggagatattattactggggaagtgtatatgatc
cggaaaagttccgtgggggtgcgaattcaaactttgaatcaaaaactcgttatggatcta
ggtctaattggaaatattcatgtggccaatgtatcgcgaagttatgttgataagctggac
aatgtttttcagaaaaccgatatgatacgagcaaaaattatcgctcaaagaggaaaagaa
tatagcatcgctactaatgctccaaatttgggcgtaatcacctcaacttgtaaatactgt
ggaaaagaaatgcaaagaaaagggaagggtcaatcaatttgtccattttgcaatcattat
gatcggaaaatcatggctaatgattttggagatcctgtcgaagtgttaaagttttaa
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