KEGG   Candidatus Lokiarchaeum ossiferum: NEF87_001958
Entry
NEF87_001958      CDS       T09593                                 
Name
(GenBank) Exosome complex component Csl4
  KO
K07573  exosome complex component CSL4
Organism
lob  Candidatus Lokiarchaeum ossiferum
Pathway
lob03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lob00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NEF87_001958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lob03019]
    NEF87_001958
Messenger RNA biogenesis [BR:lob03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     NEF87_001958
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     NEF87_001958
SSDB
Motif
Pfam: S1 Zn_ribbon_6 ECR1_N HypA OB_RRP5_4th RRP4_S1 A2L_zn_ribbon EXOSC1
Other DBs
NCBI-ProteinID: UYP45673
LinkDB
Position
complement(2360337..2360933)
AA seq 198 aa
MMNEIQSGTFVNIGDPLRMEEQYLGKNDSTYVEDGKVCAAISGILKVNESERTITIENTT
STNEIVPKHGDIITGEVYMIRKSSVGVRIQTLNQKLVMDLGLIGNIHVANVSRSYVDKLD
NVFQKTDMIRAKIIAQRGKEYSIATNAPNLGVITSTCKYCGKEMQRKGKGQSICPFCNHY
DRKIMANDFGDPVEVLKF
NT seq 597 nt   +upstreamnt  +downstreamnt
atgatgaacgaaattcaatcgggaacctttgtaaatattggtgatcctctcagaatggag
gaacaatatttagggaaaaatgactccacctatgtagaagacggaaaggtttgtgccgcg
atctctggtatattaaaagtgaatgaaagtgaacgaacaattactattgaaaacactacg
agtacaaatgaaattgtcccaaaacatggagatattattactggggaagtgtatatgatc
cggaaaagttccgtgggggtgcgaattcaaactttgaatcaaaaactcgttatggatcta
ggtctaattggaaatattcatgtggccaatgtatcgcgaagttatgttgataagctggac
aatgtttttcagaaaaccgatatgatacgagcaaaaattatcgctcaaagaggaaaagaa
tatagcatcgctactaatgctccaaatttgggcgtaatcacctcaacttgtaaatactgt
ggaaaagaaatgcaaagaaaagggaagggtcaatcaatttgtccattttgcaatcattat
gatcggaaaatcatggctaatgattttggagatcctgtcgaagtgttaaagttttaa

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