Candidatus Lokiarchaeum ossiferum: NEF87_002466
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Entry
NEF87_002466 CDS
T09593
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lob
Candidatus Lokiarchaeum ossiferum
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lob03016
]
NEF87_002466
Enzymes [BR:
lob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NEF87_002466
Transfer RNA biogenesis [BR:
lob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NEF87_002466
Prokaryotic type
tRNA splicing ligases
NEF87_002466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UYP46181
UniProt:
A0ABY6HRP4
LinkDB
All DBs
Position
complement(2926773..2928239)
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AA seq
488 aa
AA seq
DB search
MIPRRVDEGIYEVSPEMKVVKFNETIMNFTMAVPARIYANEYLMERIARDKSVDQITNVA
CLPGIRKQVIAMSDAHQGYGFCIGGVAATDVEGGAISPGGVGYDINCGVRLLRTPLKYAE
VAPVLPELTEALFQAIPSGLGSRGKLKITNTDLDRVLDEGINWAIDNGYGFEKDRVNCED
NGFTQGADSSIVSAKAKARGIRQLGSLGSGNHFIEIQKVAEILDPVAAKIMGIEKDQVTV
MIHTGSRAMGHQICTDSLQEIDHLMHREGIIAPDRELGYVISGTKEADRYLAQMRAAANF
AWTNRHIIMHWARGAFNNVLNVKPEDMELVYGLAHNILKQEEHDLGDGKRGMVNVHRKGA
TRAFPPGHKDVPLNYREIGQPVLIPGSMGTSSYLCVGQQKAMDLSFASTAHGGGREMSRS
KAKRKFFGKNIKQELNDRGISVRAASLKVLAEEAPLAYKNIDEVVGVSHNLGIVKKVARL
VPIGVTKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgattccaagacgtgttgatgagggcatctatgaggtttccccggaaatgaaagttgta
aagtttaatgaaaccattatgaattttacaatggctgtgccggctcgtatatatgctaac
gaatatttaatggaacgaattgcacgagataaaagtgttgaccaaattacgaatgtagcg
tgcttacctggaattcgaaaacaagtgattgcgatgtccgatgcccatcaagggtatggg
ttttgtatagggggggtggctgcgaccgatgttgaagggggggctatttcaccaggggga
gtggggtatgatattaattgcggggttcggctattacgaacacccctaaaatatgctgaa
gttgctccagtacttcctgaattgacagaagccttatttcaagcgattccaagtggattg
ggttctcgtggaaagttgaaaattacaaatacggatctcgatagagttctggatgaaggg
ataaattgggcaattgataatgggtatggattcgagaaagatcgtgtgaattgtgaagat
aatgggtttacccaaggtgctgatagttcaatagtctcagcaaaagcaaaagcccgagga
attcgacaattaggttctttaggatcgggtaatcattttattgaaattcaaaaagtggct
gaaatactggatcccgttgcagcaaaaattatgggtattgagaaagatcaagtcaccgtt
atgattcataccggaagtcgggccatgggtcaccagatttgtaccgattctttgcaagaa
attgatcatttgatgcatcgggagggaattattgctcctgatcgagaacttggttatgta
atatctggaactaaagaagctgatagatatttagctcaaatgcgcgctgcggctaatttt
gcttggaccaatcgtcatataatcatgcattgggctcgtggggcatttaataacgtttta
aacgtgaaaccagaggatatggaattagtttatggtttagcccataatattttgaaacaa
gaagaacatgatcttggagatggaaaacggggaatggtaaatgttcaccgaaaaggtgct
actcgcgcatttccacccggtcataaggatgtacctttaaattatcgtgaaattggtcaa
cccgttttaattcctggttctatggggacttcatcttacttatgtgtgggtcaacaaaaa
gcaatggatctcagttttgcgtcaacagcacatggtggaggacgagaaatgagtcgatcc
aaagcaaaacgcaaattctttggtaaaaatatcaaacaagaattaaatgatcgaggaata
tctgttagagccgcatccttgaaagtgctcgcggaagaagctcctcttgcttacaaaaac
attgatgaagttgttggtgtatctcataatttaggaatcgtgaagaaagtggcacgttta
gttccaattggagtaactaagggataa
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